Carnobacterium sp. CP1: NY10_85
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Entry
NY10_85 CDS
T04230
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
carc
Carnobacterium sp. CP1
Pathway
carc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NY10_85
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carc03019
]
NY10_85
03400 DNA repair and recombination proteins [BR:
carc03400
]
NY10_85
Enzymes [BR:
carc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NY10_85
Messenger RNA biogenesis [BR:
carc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NY10_85
DNA repair and recombination proteins [BR:
carc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NY10_85
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ALV20710
UniProt:
A0A0U3E422
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All DBs
Position
65228..66997
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AA seq
589 aa
AA seq
DB search
MLAKAHQLLHDIYGFNAFRFGQKEVIEKILNGQDSLAIMPTGGGKSLCYQIPALVFDGVT
IVVSPLISLMKDQVDALTELGIAATFLNSTLSSAEMNDRLKKASNGDYKLVYVAPERFQT
EEIFYLMQSVKVSMIAIDEAHCISQWGHDFRPSYLSLCDTIQNFTYRPTILALTATATPL
VSNDILQLLGIEENNRVNTGFVRDNLAFQVVKGQERNRYLLDYLKINEGQSGIIYASTRK
EVERIYLLLKTNKITVGKYHGGMKEEERNDWQEKFLYDEVNVMVATNAFGMGIDKSNVRF
VIHYQIPKNIEAYYQEAGRAGRDGLPSDAILLFSPQDMQIQHYFIEQSEMNEEHKKLEYT
KLREMAQYGSTQMCLQRYIVRYFGEECGECGHCSNCLDEREAIDVTLDTQKVLSCVKRMG
ETFGKSMVMKVLTGSKDQKIKQWKFEELSTYGLMKTSSQKEVTQLIDYLTAEKYLMPTDG
QYPLLKVTEKGVTVLKGELKVTRKQAQQAHKVAIDDVLFDRLREVRKGLATIQKVPPYVI
FSDETLKQMCQLMPQTDNELLMVKGVGENKLEKYGAVFLEELKKTSVKS
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgttagcgaaagctcatcaattgcttcatgacatttatggctttaatgcttttcggttt
ggccaaaaagaagtaattgaaaagattttaaatggtcaagattcattagccattatgcct
accggaggcgggaaatcgctttgttaccagattccggcattagtgtttgatggcgtgacc
atcgttgtttcgccattgatttctttgatgaaagatcaagtggatgctttgacggaatta
ggcatagcagcaacatttttaaatagtacgctttcgtcagcggaaatgaatgatcgattg
aaaaaagccagcaatggggactataaattagtctatgttgcacctgaacgtttccaaacg
gaagaaatcttttatttgatgcaatcggttaaagtatcgatgattgctattgatgaagcg
cattgtatttcacaatgggggcatgattttagaccgagttatttgtcgttatgtgatacg
atccaaaattttacttatcgtccaactattctggctttgaccgctactgcaacaccgctt
gtatctaatgatatcttgcaattattaggaattgaagaaaacaatcgtgtgaatacagga
tttgttcgcgataatttagctttccaagtggtaaaaggccaagaacggaatcgctatctc
ttggattacttaaaaatcaatgaaggacaatctgggattatttacgccagtacacgcaaa
gaagttgaacggatttacttgttattaaaaacgaacaaaataactgttggaaaataccat
ggtggaatgaaagaagaggaacgaaacgattggcaagaaaaattcctctatgatgaagta
aacgtaatggttgcaactaatgcttttggaatgggaattgataaaagcaatgtgcgtttt
gtcatccattaccaaattcctaagaatatcgaagcatactatcaagaagcaggccgggct
ggtcgagacggattgccaagtgacgctattttattgttttcgccgcaagacatgcaaatt
caacattatttcatcgaacaatctgagatgaatgaagaacataaaaagcttgaatacact
aagctaagagaaatggcacaatatggttctactcaaatgtgcttgcagcggtacatcgtt
cgttattttggggaagaatgcggagaatgcgggcattgcagcaattgtttggatgagcga
gaagccattgacgtcactttagatactcaaaaagttttatcttgtgttaaacgtatggga
gaaacttttggtaaatcaatggtcatgaaagtactgacgggttcaaaagaccaaaaaata
aaacaatggaagtttgaagaattgtcgacttatggcttaatgaagacgtcttctcaaaaa
gaagtaactcagctgatcgattacttgacggctgaaaaatatttgatgccgaccgatgga
caatatcctttattgaaagttactgagaaaggcgtgacagttttaaaaggcgaactaaaa
gtgacacgtaaacaagctcagcaagcgcataaagttgctattgacgatgtgttgtttgat
cggctgcgtgaagtacgaaaaggactggcaaccatccaaaaagtgcctccttatgttatt
ttttcggatgagacactgaagcaaatgtgtcaactcatgcctcaaacagataatgagctt
ttgatggtcaaaggagttggagagaataaactggaaaaatatggagccgtatttttagaa
gaactaaaaaaaacaagcgtcaaaagttga
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