Collimonas arenae: LT85_0360
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Entry
LT85_0360 CDS
T03512
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
care
Collimonas arenae
Pathway
care03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
care00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT85_0360 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
care03019
]
LT85_0360 (cshA)
03009 Ribosome biogenesis [BR:
care03009
]
LT85_0360 (cshA)
Enzymes [BR:
care01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LT85_0360 (cshA)
Messenger RNA biogenesis [BR:
care03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LT85_0360 (cshA)
Ribosome biogenesis [BR:
care03009
]
Prokaryotic type
rRNA helicases
LT85_0360 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AIY39520
UniProt:
A0A0A1F6T8
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All DBs
Position
complement(437903..439840)
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AA seq
645 aa
AA seq
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MPETSIPLFSDLKLSEPLLRVVKELGYESPSPIQAATIPVLLANRDVLGQAQTGTGKTAA
FAFPILSRVDIKQSAPQALVLAPTRELAIQVAEAFQRYATYIPGFHVLPIYGGQSYGAQL
SALRRGVHVVVGTPGRVIDHLEKGSLDLSKIKTLVLDEADEMLRMGFIDDVETILQKTPE
SRQTALFSATMPSAIKRIAQTYLRNPAEITVAAKTGTADNIRQRYWLVSGMQKLDALTRI
LEAETFDGMIIFSRTKLGTEELAGKLLARGFSAAAINGDIVQQQRERTIQQLKDGKIDIL
VATDVAARGLDVERISHVINYDVPHDPESYTHRIGRTGRAGRSGEAILFVTPRERNLLKA
IERATRQPISMLELPSVQTVNDVRIAKFKTQISDTLAAGGLDVFRSLIEDFERESNVPST
DIAAALAKMAHGDMPLLIDKKKGEASAAPSWPEDKVARVGKAVRPAREERNETADRFERD
QRQEPVTRAVFARKEPAARTTDVGMRTFRIEVGHAHGVKPGNIVGAIANEAGLDAKYIGR
IEIFDDHSVLDLPDGMPKELLDHLKTVWVAGQQLRIAYADGVPPSQKFSDKKVPLSNPKT
GADRRVGEKKFGEKTAVKSKSTVANRPAEAAKPRPKPHRKGPPAR
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaacatctattcccttattttccgatctgaagctgagcgaaccgctactgcgg
gtggtgaaggaactcggttacgaatcgccttccccgatccaggccgccaccatcccggtg
ctactggccaaccgcgatgtgctgggccaggcacagaccggcaccggcaaaacggcggcc
tttgcgtttcccattctttcgcgtgttgacatcaagcaaagcgcgccgcaggcgctagtg
ctggcgcccacgcgtgagctggctatccaggtggcggaggcgtttcaacgctatgccacc
tatatccccggctttcacgtcttgccgatttacggcggccagagttacggcgcgcaattg
agcgcattgcgccgtggcgtgcatgtggttgtcggcacgccggggcgcgtgatcgaccac
ctagaaaagggttcgctcgacctgtcgaagatcaagacgcttgtgctggatgaggcagac
gagatgctgcgcatgggttttatcgacgatgtggaaactatcctgcaaaagacgccggaa
tcgcgccagactgccttgttctcggccaccatgccttctgccatcaagcgtattgcccaa
acctacctgcgtaacccagccgaaatcaccgtcgctgccaagaccggcacggctgacaat
atccgccagcgctactggcttgtcagcggcatgcaaaagctcgatgcgctgacgcgtatc
ctggaagccgaaaccttcgatggcatgatcattttctcgcgtaccaagctgggtaccgaa
gaattggccggcaaactgctggcgcgcgggttttccgccgcagcgatcaatggcgacatc
gtgcagcagcagcgcgaacgtacgatccagcaattaaaggacggcaagatcgatatcctg
gtcgcaacagacgttgccgctcgcggcctcgatgttgagcgcatcagccacgttatcaat
tacgatgtgccgcacgacccggaaagctacacccaccgcatcggccgcaccggccgggcc
gggcgcagcggcgaagccattctgttcgtcacgccgcgcgaacgaaacctgctcaaggcc
atcgagcgcgccacgcgccagccgatttccatgctggaactgccgagcgtccagacggtc
aacgatgtgcgcatcgccaaattcaaaacccagatcagcgacaccctggcggcaggcggc
ctagatgtgttccgttcgctgatcgaagatttcgagcgtgaaagtaatgttccatcgacc
gatatagcggcagcgctggcgaagatggcgcacggcgacatgccgctcttgatagacaag
aaaaagggtgaggcatcggccgcgccgtcatggccggaagacaaggttgcgcgcgtgggc
aaggcggtacgtccggcgcgtgaggaacgcaacgagacggccgaccgtttcgagcgcgat
cagcgccaggaaccggtgacgcgcgccgtgtttgccaggaaggagccggcggcacgcaca
acagatgtcggcatgcgcacgttccgcatcgaggtcgggcacgcgcatggcgtcaagccc
ggcaatatcgtcggcgccatcgccaacgaagcgggtctcgatgccaagtacatcggccgt
atagaaatattcgacgaccatagtgtactggacctgccagacggcatgcccaaggaactt
ctcgaccacttgaaaaccgtgtgggtcgccgggcagcaattgcgcatcgcgtatgcggac
ggcgtgccgccgagccaaaaattttccgacaaaaaagtaccgctgtccaacccaaaaacg
ggcgcggatagaagagtcggtgaaaagaaattcggcgagaagacagcagttaaaagtaaa
agcactgtcgctaatcgcccggctgaggccgccaaacccaggccgaagccgcatcgcaag
ggaccgccggcccgctga
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