Collimonas arenae: LT85_0386
Help
Entry
LT85_0386 CDS
T03512
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
care
Collimonas arenae
Pathway
care03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
care00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LT85_0386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
care03021
]
LT85_0386
03400 DNA repair and recombination proteins [BR:
care03400
]
LT85_0386
Enzymes [BR:
care01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LT85_0386
Transcription machinery [BR:
care03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LT85_0386
DNA repair and recombination proteins [BR:
care03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LT85_0386
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AIY39546
UniProt:
A0A0A1F4Q7
LinkDB
All DBs
Position
467727..471965
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDSIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVITDPGMTPLKRCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRAIDIDRDAETLRQELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFHKLEVMGIASTIKAAKKEVENQTSVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREQINGKGEGMMFPDVSEAIRAYDNK
EVELTTRITVRITEYPKDPATGEFVKTIKRYETTVGRAILSEILPKGLPFTVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATIIATAEQ
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMEQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI
LGRVAANDIVNPETQGTLYESGTLLDEDAVEEIERLGIDEVKVRTPLTCDTRYGLCAQCY
GRDLGRGTLVNNGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRSAVASSVEAKSNGTVR
FTATMRYVTNGKGELIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGLTIKAGTALA
TWDPLTRPIITEYTGTVRFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQIVDAGDASYITGEQVERSELLDENDRVIAAGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDTLRGLKENVIVGRLIPAGTGLAFHRARKEKDSWEAEE
RTALLQSEQAARLAAAEARAAEELGAQESGEA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatttattcaagcaagttcagcaaaatgaacagttcgactcgatc
aagattggtctggcgtcgcccgaaaaaatccgttcatggtcttatggcgaagtaaaaaag
cctgaaaccatcaactatcgtaccttcaagccagagcgcgacggtttgttctgcgccaag
atttttggcccgatcaaagactacgaatgcctctgcggcaagtacaagcgtctgaagcat
cgcggtgtgatctgcgaaaagtgcggcgttgaagtcacgctggccaaggtgcgccgtgag
cgcatgggccacatcgaactggcttcgcctactgcacatatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctcgacatgaccctgcgggatatcgaacgcgtattgtat
tttgaagcctacgttatcactgatccaggcatgacgccgctgaagcgctgccagatcatg
tcggaagacgattacgccgccaagtacgaagagtacggcgacgatttcaccgcattcatg
ggcgctgaaggcatccgtgagttgctgcgcgcgatcgatatcgaccgcgatgcggaaacc
ctgcgccaggaattgaaagaatcgaagtccgaagccaagatcaagaaatacgccaagcgc
ctgaaagtgctggaagcgttccaacgttcgggcatcaagcctgactggatgatcatggaa
gtgttgccggtgctgccgcctgagttgcgtccgctggtaccgctggatggcggccgtttc
gctacctccgatctgaacgacctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgatggaattgcgcgctccggaaatcatcacccgcaacgaaaagcggatgttgcag
gaagcggttgactcgctgctggataacggccgtcgcggtaaggcaatgacaggcgccaac
aagcgtcctctgaaatccctggcagaaatgatcaagggtaagggcggccgtttccgtcag
aacttgctgggtaagcgcgtcgactactccggtcgttcggttatcgtggtgggtccacaa
ctgaaactgcatcaatgcggtttgccgaaattgatggctctggagctgttcaagccattc
attttccacaagctggaagtgatgggcatcgccagcaccatcaaggcagccaagaaagaa
gttgaaaaccagacttcggtcgtgtgggacattctggaagacgtgatccgtgaacatccg
gtcatgttgaaccgtgcgcctactttgcaccgtctgggtatccaagcgtttgaaccggtc
ctgatcgaaggcaaggcaattcaattgcacccgctggtttgcgccgcattcaatgccgac
tttgacggtgaccagatggcggtccacgttccattgtcgatcgaagcgcaaatggaagca
cgcactttgatgctggcttccaacaacatcctgttcccgtcgaacggcgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactacgccacccgtgagcaaatcaacggc
aagggcgaaggcatgatgttccctgacgtgtcggaagccattcgcgcctacgacaacaag
gaagtcgaactgactacccgcattaccgtgcgtattaccgagtatccgaaggatccggca
acaggtgaattcgtcaagaccatcaagcgctacgaaacaaccgttggccgcgctatcttg
tcggaaatcctgccgaagggcctgccattcaccgtgctgaaccgcgcgttgaagaaaaag
gaaatctcgaagctgatcaacacgtcgttccgcaaatgcggtctgcgcgctacggtggtg
tttgccgaccagttgatgcagtccggtttccgcctggcgacccgtgcaggtatttcgatc
tgcgtggatgacatgctggtaccgccacaaaaggcaaccatcatcgccaccgcagaacaa
gaagtgaaacagatcgaacagcagtactcgtccggtctggtgactgccggcgaacgctac
aacaaagtggtggacatctggggcaaggccggcgacgacgtcggcaaggccatgatggaa
caactgaaggtggaagacgtggttcgccgcgacggcaccaagggtactcaggaatcgttc
aacgcgatttacatgatggccgactccggtgcgcgtggttccgcagcgcagattcgtcag
ctggccggtatgcgtggcctgatggcgaaaccggatggttcgattatcgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgttttgcagtactttatttcgacgcacggtgcg
cgtaaaggtctggccgataccgcgctgaaaacagcgaactcgggttacctgacacgccgt
ttggtcgatgtgacccaggatctggtcgtgatcgaagatgattgcggcacttccaacggc
gcgtcgatgaaggcgatggttgaaggcggtgaagtgatcgaagcgctgcgcgaccgtatc
ctcggccgtgttgctgccaacgatatcgtcaatcctgaaacacaaggcaccttgtacgag
tccggtacgttgctggacgaagatgcggtggaagaaatcgaacgcctcggcatcgatgag
gtcaaggtccgtacgccgctgacttgcgacacacgctacggcctgtgcgcgcaatgttac
ggtcgcgatctgggccgcggcacgctggtcaacaacggtgaagcagtcggtgtggttgct
gcgcagtcgatcggtgagccaggtacccagctgaccatgcgtaccttccacatcggtggt
gcggcatcgcgttcggcagtggcatcgagtgttgaagccaagtccaacggtacggttcgc
ttcacagcgaccatgcgttacgtgactaacggcaagggtgaattgatcgtgatttcccgt
tccggtgaagtcctgatcactgacgaccacggccgtgagcgcgagcgtcataaagtacct
tacggtgcgaccctgatcgtcaaagatggcttgaccatcaaggcgggtacggcattggca
acatgggatccgctgactcgtccgatcattaccgagtacacaggtactgtccgtttcgag
aacgtcgaagaaggttcgaccgttgcccgtcagatcgatgaagtgaccggtctgtcgaca
ttggtggttatcgatgcgaagcgccgtggttcggtgaccaagactgttcgtccacaagtt
aagctgttgaacgagcaaggcgaagaagtcaagattgccggtactgaacacgcagtgacc
atcggcttccaggttggcgcgctgattaccgtgaaagacggtcagcaagtacacgttggt
gaagtgctggcgcgtatcccgacagaatcgcaaaagacgcgcgatattaccgggggtctg
ccacgtgttgccgaactgttcgaagcgcgttcgccgaaggatgcaggtatgctggctgaa
gtcacaggtactgtggcgttcggtaaggaaaccaagggcaagcaacgtctggaaatcaca
gacatggacggcaacaagcacgagttcctgattaccaaggacaagcaagtgctggtacat
gacggccaggttgtgaacaagggtgaaatgattgtcgacggcccggccgatccgcaagac
atcctgcgcctgttgggtatcgaagcgctggcacgttatatcgtcgacgaagtgcaagac
gtgtaccgtttgcaaggcgtgaagatcaacgacaagcacatcgaagtgattgtgcgccag
atgctgcgtcgcgttcagatcgttgatgccggcgatgcttcgtacatcactggtgagcaa
gtcgagcgttcggaactgctggacgaaaacgatcgtgtgattgcagctggcaagattcct
gcaacctacgagaacgtattgctgggtattaccaaggcatcgctgtcgaccgattcgttc
atctcggccgcatcgttccaggaaactacccgcgtgttgaccgaagctgcaatcatgggc
aagaaagacacgttgcgcggcctgaaggaaaacgtgatcgttggtcgtctgatcccagcc
ggtaccggtctcgcattccaccgcgcccgcaaggaaaaagacagctgggaagcggaagag
cgcacagcactgttgcaatccgagcaggcagcgcgtcttgctgcagcggaagcgcgcgca
gctgaagagctgggcgcacaagaaagcggcgaagcttaa
DBGET
integrated database retrieval system
