Collimonas arenae: LT85_1048
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Entry
LT85_1048 CDS
T03512
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
care
Collimonas arenae
Pathway
care03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
care00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT85_1048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
care03021
]
LT85_1048
03019 Messenger RNA biogenesis [BR:
care03019
]
LT85_1048
Transcription machinery [BR:
care03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LT85_1048
Messenger RNA biogenesis [BR:
care03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LT85_1048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
OB_RNB
NACHT
S1CSD-TOTE-2
FtsK_SpoIIIE
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIY40206
UniProt:
A0A0A1F6S8
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All DBs
Position
complement(1180366..1181580)
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AA seq
404 aa
AA seq
DB search
MAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPDGFGFLRSPDASYMAST
DDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGESPEASKHRILFENL
TPLHPNKPLPLERDMRGEENITGRIIDMIAPIGKGQRGLLVASPKSGKSVMLQHIAHAIT
TNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHVQVAEMVLEKAKRLVEM
KKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTII
ATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINLNKSGTRREELLIKPDQ
LQKIWVLRKLLYSMDEIEAMEFILDKIKSTKNNAEFFDMMRRGG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcaatcggcctggacatcgataacgcagcgcgtttgcgcaaacaagaactgatgttc
gcgatcctgaaaaagcgcgcgaaatcaggagaacaaatttttggcgatggcgccctcgaa
gtcctgcctgacggctttggcttcctgcgctcgcccgacgccagctacatggcgtctacc
gacgacatctatatctcgccttcgcaaatccgccgcttcaatctgcacaccggcgattcg
atcgaaggtgaagtgcgtacgccgaaagacggcgagcgctatttcgcactggtcaaggtc
gacaaggtcaacggcgaatcaccggaagcgtcgaagcaccgcatcctgtttgaaaacctg
acaccgctgcacccgaacaagccgctgccgctggaacgcgacatgcgcggcgaagagaat
atcaccggccgcatcatcgacatgatcgcacctatcggcaagggccagcgcggcctgctg
gtagcgtcgccgaagtcgggtaaatcggtcatgctgcaacacattgcgcatgcgattacc
accaaccatcctgataccgtgatgatcgtcctgctgatcgacgaacgtccggaagaagtg
accgaaatgcagcgctcggtgcgcggcgaagtggtggcgtcgactttcgatgagcctgcc
acacgccacgtgcaagtcgctgaaatggtgctggaaaaagccaagcgcctggtcgaaatg
aaaaaagacgtggtgatcctgctggactcgatcacccgtctggcacgcgcctacaacacc
gtgattcctgcctccggcaaggtactgaccggtggtgtcgacgctaacgcgctgcaacgt
ccgaagcgtttcttcggcgcggcccgtaacatcgaggaaggcggttccctgaccatcatc
gctaccgccctgatcgaaacaggcagccgcatggacgacgtgatctacgaagaattcaag
ggtaccggcaacatggaagtccacctggaacgccgcctcgccgagaagcgcgtataccca
gccatcaacctgaacaaatccggcacccgccgtgaggaattgctgatcaagcctgaccag
ctgcaaaagatctgggtactgcgcaagctgctgtacagcatggacgaaatcgaggcgatg
gagttcatcctcgacaagatcaagtcgaccaagaacaacgccgagttcttcgacatgatg
cgtcgcggcggctaa
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