Collimonas arenae: LT85_1051
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Entry
LT85_1051 CDS
T03512
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
care03400
]
LT85_1051
Enzymes [BR:
care01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LT85_1051
DNA repair and recombination proteins [BR:
care03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LT85_1051
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
PDDEXK_1
AAA_30
DEAD
Motif
Other DBs
NCBI-ProteinID:
AIY40209
UniProt:
A0A0A1F954
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All DBs
Position
1185139..1188465
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AA seq
1108 aa
AA seq
DB search
MSAAIPDQADLPSAYRMNGDVVEAQAFTNAACDPRYSVVVEACAGSGKTWLLVARMLRLL
LAGAAPSELLAITFTRKAAQEMRERLLELLHDLALQPEAKVRNLLLERGIAPQELAQVLP
AARNLYERVLSSPQSLSIDTFHSWFARLLQIAPLASGVPHGYSLTEKTGELLADAYLRFM
QSLNDEENNAIKQDLLALYQLTGDFSTRKLLNAFIDKRAEWWAVTRQGAEAPLEWLRELC
GEDAETDARLSLWDDEKLSSQIKQIAWLLGQGSATNQKRATAIEMALTAGAAVENFDALC
HQFFDDNGKPRSNGKAKDFLKALENSLGGNALDAFDEQFNVTGEALKLLRRRSFEPTVLS
MNQHLFSVGNAYLECYQALKAEQRVFDFADLEWQAYRLLTNPETAAYLQSRLDTRYKHIL
LDEFQDTNPLQWSIVRAWLGAYGEDAGQPSVFVVGDPKQSIYRFRRAEPRVFEAARTLLQ
EQGATVLQANQTRRNASAIVEVLNASFRANPLFSAQTTLGETGGEVWRLPLVKQLAGDDA
DDASSPGLRNPLITAREESEDARRRDEGKQLAQALWLARQRLTVAQESGRRSLCWSDVML
LVKKRSHLGAYESALREASIPFMSDKRGGLLESLEISDLIALLTFLITPDDARALGHVLK
SPIFGADDEDLISLAQRTERGWWVRLRAAAKDVNATHAVQRAVVLLEQWLQAAPRLPVHD
LLDVILHQGQLLARYAQAASPLSRSQAIGNIETFIELALNMDGGRYPSLPKFIDALRGLQ
QASGGDAPDEASIDAATDAVRILTVHSAKGLEAPVVVLLDANHSKPARDDYGILCDWPQD
AEAPQHFSAFGSSAERGAARDPLFNAEEGFKTQEDWNLLYVATTRAKQLLIISGVAGRSG
GITEDSWYARLEQVPETAVAEAAEHMLDAVASGAQRFDQEIFDPPQLPPPVVAVAATFDS
QVIAEGIALHGLLERVTQHGQWPAVLPDSETIARWLPCPLAMAKQVRQQAQTILAQKELA
HFFDPALHLHARNEMEIIADSTVLRFDRVVVFEDEVWILDYKRNLLDSERATYTAQLRSY
RQAAQPVFADKRLRTALLTVDGRLTEID
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcagcgatccctgaccaggccgacttgcccagcgcctatcgcatgaacggcgac
gtggtcgaagcgcaggcttttaccaacgccgcctgcgatccgcgatattcggtcgtggtg
gaagcctgcgccggcagcggcaagacatggctgctcgtggcgcgtatgttgcgcctgttg
ctggccggtgccgcgccgtctgaattgctggcgattacctttacccgtaaagctgcgcag
gaaatgcgcgaacgcctgctggagttgctgcatgatctggcgctgcagccagaagccaaa
gtgcgcaatttactgcttgagcgcggcattgcgccgcaggaactggcgcaggtgctgccg
gcagcgcgtaatctgtatgaacgtgtgctgtccagtccgcaaagcctgtcgatcgatacc
ttccacagctggtttgcgcggctgttgcaaatcgcgccgctggcctctggcgtgccgcat
ggttattctttgaccgagaaaaccggtgagctgctggcagatgcgtatctgcgtttcatg
caatcgctgaacgatgaagagaacaacgcaatcaaacaggatctgctggccctgtatcag
ttgaccggcgatttcagcaccagaaaactgctcaatgcctttatcgacaagcgcgccgag
tggtgggcggtgacccgccaaggcgccgaggcgccgttggaatggctgcgtgaattgtgc
ggcgaagatgctgaaaccgacgcccgcttatcgctatgggatgacgagaagctgtcatct
caaatcaagcagatcgcctggctgctggggcaaggttcagctaccaaccagaagcgtgcg
acggcgattgaaatggcgctgaccgcaggtgctgcggtggaaaatttcgacgcgctgtgc
catcagttttttgacgacaacggcaagccgcgcagcaatggtaaggccaaggattttctc
aaggcactggaaaacagcctgggcggtaatgcgcttgacgctttcgatgagcagttcaac
gttacaggtgaagcactaaaactgctgcgccggcgcagcttcgagcccacagtgctgagt
atgaaccagcatctgttcagcgtcggtaatgcctatctggaatgctatcaggcgctgaag
gccgagcagcgcgtgttcgatttcgccgatctggaatggcaggcctatcgcttgctgacc
aatccggagactgcggcttacttgcaaagccggctcgatacgcgctacaagcatatcctg
ctcgatgagttccaagacaccaatccgctgcaatggagcatcgtgcgcgcctggcttggc
gcttacggcgaagacgctggccagcccagcgtgttcgtggtgggtgatccgaagcaatcg
atctaccgtttccggcgcgctgaaccgagggtctttgaagctgcacgaacattattgcaa
gagcagggcgcaacggtgttgcaagccaaccagacgcgccgtaacgcaagtgcgattgta
gaagtgctgaatgccagttttcgcgccaatccgctgttttcagcgcaaaccacgctaggc
gaaaccggcggggaagtttggcggctacctttggtcaagcaactcgcaggcgacgacgcg
gacgatgcatcttcgccgggcttgcgtaatcctttgatcacggcgcgcgaagagtcggaa
gatgcgcgccgccgcgatgaaggtaagcagttggcgcaagcgttgtggctggcccggcaa
cgactgaccgtcgctcaggaaagtggccgtcgcagtctgtgctggtctgacgtgatgctg
ctggtgaagaagcgcagtcatctcggcgcttacgaaagtgcattgcgtgaagccagtatc
ccgttcatgtcggacaagcgcggtggcctgctggaatcgctggaaatctccgacctgatt
gccctattgacctttctgattacaccggacgatgcgcgcgcgcttggtcacgtattgaaa
tcgccgatcttcggcgccgacgatgaggatctgatcagcctggcgcaacgcaccgaacgc
ggctggtgggtgcgtctgcgagctgctgccaaggatgtgaatgcgactcatgcggtgcaa
cgagcagttgttttgctggaacaatggctgcaagctgcgccgcgtttacctgtacatgat
ctgctggatgtgatcttgcatcaaggacagctgctggcgcgctacgcacaagcagcatcg
ccgctttcgcgcagccaggctattggcaacatcgaaactttcatcgagctggcgttgaac
atggatggcggccgttatcccagcctgccgaagttcattgacgccttgcgcggactgcaa
caagccagcggcggtgacgcgcccgatgaagccagcatcgatgcagctaccgacgcggtg
cgcattctgacggtgcatagcgccaagggcctggaagctccggtggtagttttgctggac
gccaatcacagcaaacctgcgcgtgacgactacggcatcctgtgcgactggccgcaagac
gcggaagcgcctcagcatttttctgcgttcggcagtagtgcggaacgtggcgctgcgcgc
gatcctttgtttaacgcggaagagggcttcaagacccaggaagactggaacttactctac
gtggctacgacgcgcgccaaacagttgctgatcattagcggcgtcgcaggaagaagcgga
ggtatcacggaagacagctggtatgcgcgtcttgagcaagtgcctgaaacagccgtcgcc
gaggccgcagaacacatgctggatgccgttgccagcggtgcgcaacgattcgatcaagag
atcttcgacccgccgcaattgccgccgccggttgttgcggttgcagcgactttcgatagc
caggtcattgcggaaggcattgccttgcacggtttgctggagcgcgtcacccagcatggg
cagtggccggcagtgctgccggacagtgagactatcgcccgctggctgccatgtccgctg
gcgatggcgaagcaggtgagacagcaggcgcaaaccattctggcgcagaaggaactggcg
catttctttgatcctgccttgcacctgcacgcgcgaaatgaaatggaaataatcgccgat
agcacggtgttgcgtttcgaccgcgtagtggtatttgaggatgaagtatggattcttgat
tacaagcgcaatctgctggatagcgagcgtgcaacctacacggcccagttgcgcagttat
cggcaggcagcgcagccggtgttcgccgataagcgcctgcgaaccgctttgctgactgtg
gacgggcgtttgactgagattgactag
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