Collimonas arenae: LT85_1165
Help
Entry
LT85_1165 CDS
T03512
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
care
Collimonas arenae
Pathway
care02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
care00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LT85_1165 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
care03021
]
LT85_1165 (rpoD)
Transcription machinery [BR:
care03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LT85_1165 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Ribosomal_60s
Motif
Other DBs
NCBI-ProteinID:
AIY40323
UniProt:
A0A0A1F6K2
LinkDB
All DBs
Position
complement(1308841..1311099)
Genome browser
AA seq
752 aa
AA seq
DB search
MKSKAPVTNKKPQLKVVKSAKNVAAAPVKADVSVMIGSGVSQTTDAATLAAIDTSGYILP
SVKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDT
EASEEELEARRQKLKTLIKMGKERGFLTFAEINDHLPENIIDPEAIEGIIGTFSDMGIAV
SEQAPDAETLLLSDNVATVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELL
TREGEIEIAKRIEDGLKDMIQAISACPTTIAEILLAAEKIGKDEIKIDEIVDGLVDPNQS
DDAVAVSAAAAATSDEENDEDEEEEEEDEEEEDASSTSGAAGFSAEQLEQLKRDALGKFE
TISTQFDKMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQ
IERQILDVAVNKCGMPRPHFIKVFPGNETNLDWVDGEVEGNHAYSIVLGRNVPAVKELQQ
RLIDLQARVVLPLPDLRGINKKMGAGERKARMAKREMTEANLRLVISIAKKYTNRGLQFL
DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK
MNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDF
IEDNNTLAPADAALHASMRGVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDV
TRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcgaaagcccctgtgacaaacaagaaaccacaactcaaagtcgtcaaatcagcc
aaaaacgtagcggcggcccctgtcaaagccgacgttagcgtgatgataggctcaggcgta
agtcaaaccacggatgccgcaactcttgcggcgattgatacctccggctatatcctgccg
tcggttaaggtgccaggacgtcgtggtcgcaagccaaaagaattccaacctgagaacgat
gaagtcgcggcgctgaatgcggtcgaacgcgctgaattgaaggcagtagacaaagccaag
gccaaggatcgcaaagccaaggaaaaggctttgctgaaggatgcgttttcatccgacacc
gaagcaagcgaagaagaactcgaagcgcgccgtcaaaaactcaagaccctgatcaagatg
ggtaaggagcgcggcttcctgaccttcgcagaaatcaacgatcacctgcctgaaaacatt
atcgatccggaagccatcgaaggcatcatcggtacgttcagcgacatggggattgctgtc
tccgaacaggcgccagacgcagaaacgctgctgttgtcggacaatgtggcgacagtcgcc
agcgatgacgacgccgaagcagctgctgaagcggcgctgtcgacggtcgactccgacttc
ggccgcaccaccgacccggttcgcatgtacatgcgtgaaatgggttcggtcgaactgttg
acgcgcgaaggcgaaatcgaaatcgccaaacgtatcgaagacggcctgaaagacatgatc
caggcaatctcggcctgcccgaccactatcgctgaaatcctgttggccgccgagaaaatc
ggcaaggatgaaatcaagattgatgaaatcgtcgatggcctggttgaccctaaccagagc
gacgatgcggtagctgtcagcgcagccgctgcggccaccagcgacgaggaaaacgacgaa
gacgaggaagaggaagaagaagacgaggaagaagaggacgccagctcgacctccggcgcc
gcaggcttctcggcggaacaacttgagcaactgaagcgcgatgcgctcggcaagtttgaa
accatctcgacccagttcgacaagatgcgcaaagctttcgaaaaagaaggctacaactcc
aagccctacgtcaaggcgcaggaaatcatctcgaacgagttgctgggtattcgctttacc
gccaaggttgtcgaaaaactgtgcgacaccctgcgtggtcaggtcgatgaggtgcgccag
atcgagcgccagatccttgacgttgcggtgaacaaatgcggtatgccgcgtccgcatttc
atcaaggttttcccgggaaatgaaaccaatctggactgggtcgacggcgaagtcgaaggt
aatcacgcctacagcattgtcctgggccgtaacgtgcctgcagtgaaagaactgcagcag
cgcctgatcgatttgcaggcgcgcgtcgtgctgcctttgccagacctgcgcggcatcaac
aagaagatgggcgccggcgaaagaaaagcgcgtatggccaagcgcgagatgaccgaggcc
aacttgcggctggtgatctcgattgcgaagaaatacaccaatcgcggcctgcaattcctg
gatctgatccaggaaggcaatattggtttgatgaaggcagtcgacaagttcgaatatcgc
cgcggctataaattctcgacctatgcaacctggtggattcgccaggccatcacacgttcg
atcgccgatcaggcgcgcactatccggattccggtgcacatgatcgaaacgatcaacaag
atgaaccgcatctcgcgtcaaatcttgcaagaaaccggcgccgagccggatcctgcaaca
ctggcgatcaagatggaaatgccggaagataaaatccgcaagatcatgaagatcgccaag
gaaccgatttcgatggaaacaccgatcggcgacgacgacgattctcatctcggcgatttc
atcgaagacaacaacacgctagcgccagccgatgccgctttgcacgcatcgatgcgcggt
gtagtgaaggatatcctggactcactgaccccgcgtgaagccaaggtattgcggatgcgc
ttcggcatcgaaatgtcgaccgaccataccctggaagaagtcggcaagcaattcgacgtc
actcgtgaacggattcgtcaaatagaagccaaagcgctgcgcaagctgcgccacccttct
cgttccgacaagctgaagagcttcctcgaaggtaattaa
DBGET
integrated database retrieval system
