Collimonas arenae: LT85_1319
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Entry
LT85_1319 CDS
T03512
Name
(GenBank) Dipeptide-binding ABC transporter
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
care
Collimonas arenae
Pathway
care02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
care00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
LT85_1319
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
care02000
]
LT85_1319
Transporters [BR:
care02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
LT85_1319
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
zf-C2H2_OTU1_C
Motif
Other DBs
NCBI-ProteinID:
AIY40477
UniProt:
A0A0A1FC89
LinkDB
All DBs
Position
complement(1467969..1469777)
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AA seq
602 aa
AA seq
DB search
MNSLWLRGILVACLTCALPMHASAAAAPISPADPDKVLRFVFVAPETGFDPAVTRDLYSQ
LVNQSVFETLFAYEYLARPAKLMPSAAAALPEVSTDGMTYTIRLKKGIYFADDPVFNGKK
RELTMADFVYSWKRLFDPQLASPQTWLLEGKVVGLDEVAEQAKKTGHFNYDANVSGFELL
DRYTLRIHLKQPDFNLGMILAHQPTSAVAREVIEKYRDAQGTVMGHPVGTGPYILSQWIR
GSRMVLTANPDYRGYTWDFAPSTDPGDAAIVAKMKGKRMPQIGRVEISVMVEDQSRLLAF
EGDEVDITELQGPLAPQVLSGGKLKPEFVKKGVQLSRIVDPEISYFYWNMQDPILGGMSK
EKIALRRAIAMAHNVREELKVVWNDEGIPLEYPIPPGVVGYDPDYKSSIQYEPEVANALL
DKFGYKIGKDGYRTLPDGKPLTIRYSARADSNGQQQSEMWKKTYDTIHIRMVGDLKTFPD
LLKAEKECQLQTRTAPWIADYPDGDNFMQLFYGPNVGQNNNGCVKIPEYDKLYAASQKLP
AGPERDLLYHKMARILEVDSPSRIGYARYRNMIAQPRVIGYKKHPVMPTEWMYFDIEKRT
AK
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgctttggttacgcgggatattggttgcctgtttgacgtgcgccttgccgatg
catgcatcggctgcggcagcgccgatttcgccagctgatcccgacaaggtattgcgcttt
gtgttcgtggcgccggaaaccggttttgatccggccgtgacgcgcgacctgtattcgcag
ttggtgaatcaatcggtatttgaaacactgttcgcctacgaatacctggcccgtccggcc
aagctgatgccttcggcagcggcagccctgccggaagtcagcaccgacggcatgacttac
acgatccgcctgaaaaaaggcatctacttcgccgatgatcctgtgttcaacggcaagaag
cgcgaactgaccatggccgatttcgtctattcgtggaaacgcctgttcgacccgcaactc
gcctcgccgcaaacctggctgctggaaggcaaagtcgtcggtctcgacgaagtagcggag
caagccaagaaaaccggccatttcaactacgacgccaatgtctccggcttcgaactgctg
gaccgctacaccttgcgcatccatttgaagcagcctgacttcaatctcggcatgatcctg
gcgcatcagccaaccagcgcagtggctcgtgaagtgatcgagaaataccgcgacgcccaa
ggtaccgtgatgggccatccggtcggcaccggtccttacatcctgagccaatggattcgc
ggctcgcgcatggtgttgaccgccaatcccgattaccgcggctatacctgggatttcgcg
cctagcaccgatcctggcgatgccgccatcgtcgccaagatgaagggcaagcgcatgccg
caaatcggccgcgttgaaatcagcgtgatggtcgaagaccagtcgcgcctgctggcgttc
gaaggcgatgaagtcgacatcaccgaattgcaaggtccgctggcgccgcaagtcctgtcc
ggcggcaaactgaaacctgagttcgttaaaaaaggcgtgcaactgtcgcgcatcgtcgat
cctgaaatcagctatttctactggaacatgcaagacccgatactgggcggcatgagtaaa
gagaaaatcgccctgcgccgcgccatcgccatggcgcacaatgtccgcgaagaactcaag
gtcgtctggaacgacgaaggcatcccgctggaatacccgatcccgcctggcgtagtcggc
tatgacccggactacaagagcagcatccagtacgaaccggaagtcgccaacgccctgctc
gacaagttcggctacaagatcggcaaggacggctaccgcaccctgccggacggcaaaccg
ctgacgatacgctactcggcccgcgccgactccaacggccagcagcaatcggaaatgtgg
aaaaagacttacgacacgatccacatccgcatggtcggcgacctgaagactttccccgac
ctgctcaaggcggaaaaagagtgccagctgcaaacccgcaccgcaccatggattgccgac
tatccggacggcgacaacttcatgcaactgttctacggcccgaacgtcggccagaacaac
aatggctgcgtcaagattcctgaatacgacaagctctacgccgcctcgcagaaattgccg
gccggccccgaacgcgacctgctgtatcacaagatggcgcgcatcctggaagtcgactca
ccctcgcgcatcggctatgcccgctatcgcaacatgatcgcgcaaccacgtgtcatcggc
tacaagaagcatccggtcatgcctaccgaatggatgtatttcgatatcgaaaaacgtact
gcaaaataa
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