Collimonas arenae: LT85_2297
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Entry
LT85_2297 CDS
T03512
Name
(GenBank) 3'-to-5' exoribonuclease RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
care
Collimonas arenae
Pathway
care03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
care00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LT85_2297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
care03019
]
LT85_2297
03016 Transfer RNA biogenesis [BR:
care03016
]
LT85_2297
Enzymes [BR:
care01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LT85_2297
Messenger RNA biogenesis [BR:
care03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LT85_2297
Transfer RNA biogenesis [BR:
care03016
]
Prokaryotic type
tRNA degradation factors
LT85_2297
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rrp44_S1
OB_Dis3
CSD
S1_2
Motif
Other DBs
NCBI-ProteinID:
AIY41455
UniProt:
A0A0A1FCF3
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All DBs
Position
2559351..2561840
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AA seq
829 aa
AA seq
DB search
MNNNQLKSLLSQYSYTIPSREEILGLLRTSSEPQNAAALAAALSVKPDEMEGLTRRLNAM
ERDGQVKPDRAGIYKLTNSPGFIEGRVSSHRDGFGFLISDDGGDDVFLPEKEMQKVLHGD
RVQARIIGTDRRGRPEGTIVEVVSRANTHVIGRLLNENGVWVIAPEDKRISQDIILAGSP
GKAKAGQVVSVQLTEQPSRFTQPVGKIVEILGDIDDPGMEIEIAVRKYGVPHEFSEAAKK
LAAKLPGEVRAADLADRVDLRDVPLVTIDGEDARDFDDAVYCEPVKIGRANGYRLIVAIA
DVSHYVKPNDALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLTLVCDAVIS
AKGEIKAYQFYPAVIHSAARLTYTEVAAILGNTKGPEAAKRPGLVPHLLHLYEVFHALLQ
ARQARGAIDFETTETYIVCNAAGKIEKILPRTRNDAHKVIEECMLAANVCAADLMERHKH
PGLFRIHAHPTKEKLTILRTFLKQVGLNLGGGDTPSASDYAELMPKIKARPDAILLQTMM
LRSMQQAVYNPENIGHFGLSYESYAHFTSPIRRYPDLLTHRTIKAILQGKRYEPKGMDTS
ALNTMLSPAGRKKQAEDKAAGKKKNEGSLAIWEALGVHCSANERRADEASRDVEAWLKCY
FIRDKLGEEFTGVISGVATFGIFVQLDALYIEGLVHVTELGADYFQYDEARHELRGERTG
IRYQLTDRVTVQVSRVDLDARKIDLRLVNEPGIKTVLKNEARRADNEQGRGAKPKAGGKG
TPQKTARVTTAAKTTPAGRATKAKKVKAAGPAEKARAPKAFTKSSKRKR
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgaataacaaccagttgaagagccttttgagccaatattcctacacaatccccagccgg
gaggaaattctcggccttctgcggacctcttccgagccgcaaaacgccgccgctctggca
gcagcactaagtgtcaaacctgatgaaatggaaggtttgacgcgccgcctgaacgccatg
gagcgcgatggccaggtcaaacctgaccgcgccggcatctacaaactgaccaattcaccg
ggctttatcgaaggccgcgtcagcagtcaccgcgacggtttcggtttcttgatctccgat
gacggcggcgacgacgtgttcctgcctgagaaagaaatgcagaaagtgctgcatggcgac
cgtgtccaggcccgcattatcggcaccgaccgccgcggtcgtcctgaagggacgattgtc
gaagttgtctcgcgcgccaatacccacgtcattggtcgcttgctcaatgaaaacggggtt
tgggtcattgcgccggaagacaagcgcatcagccaggacatcattctcgccggatcgcca
ggcaaggccaaggctggccaggtggtgagcgtgcaattgaccgaacaaccgtcgcgtttt
acccagccggtaggcaagattgtcgaaattctcggcgatatcgacgatccgggcatggaa
atcgaaatcgcagtacgcaagtacggcgtaccccacgaattttccgaagccgcaaaaaag
ctggccgccaagctgccgggcgaagtgcgtgccgccgacctggccgatcgcgtcgatctg
cgcgacgtgccgctggtgacgattgatggcgaagatgcccgcgacttcgatgacgccgtt
tattgcgagccggtcaagatcggccgcgccaacggctatcgcttgatcgtcgcgattgcc
gacgtcagccattacgtcaagccgaacgatgcgctggacgtcgatgcgctggagcgcagc
acctcggtctacttcccgcgtcgcgtgattcctatgctgccggagaagctgtccaatggt
ctctgctcactgaatccggatgtcgaccgtttgacgctggtgtgcgacgccgtgatcagc
gccaagggcgaaatcaaggcttaccagttttatcctgcagtgatccattccgctgcacgc
ctcacctacactgaagttgcagcgattctgggtaacaccaaagggccggaagcggccaaa
cgcccgggtctggtgccgcatttgctgcatttgtacgaagtgttccacgcgttgctgcaa
gcgcgtcaggcgcgcggtgctatcgatttcgagaccaccgagacttacatcgtctgcaat
gccgccggcaagatcgaaaaaatcctgccgcgcactcgtaacgatgcgcacaaggtcatc
gaagagtgcatgctggcagccaacgtctgcgccgccgatctgatggagcgtcacaagcat
ccgggtctgttccgcatccatgcgcatccgaccaaggaaaaattgaccatactgcgcacc
ttcctgaagcaggtcggcttgaatctgggtggcggcgatacgccgtccgcatcggattac
gcggagctgatgccgaagatcaaggcgcggccggacgcgatcctgctgcaaaccatgatg
ctgcgctcgatgcagcaagcggtttacaacccggaaaacattggtcacttcggcttgtcg
tatgagtcgtatgcgcacttcaccagcccgatccgccgttatcccgatttgctgacgcac
cgtacgatcaaggccatcctgcaaggcaagcgttacgagccgaagggcatggataccagc
gcgctcaacaccatgctgtcgccagccggccgtaagaagcaggcggaagacaaggctgca
ggcaagaagaaaaacgagggcagcctggcgatctgggaagcgcttggagtgcattgttct
gccaatgagcgacgcgccgatgaagcatcgcgtgatgtcgaagcatggctcaagtgttat
ttcatccgtgacaagctgggcgaggaattcactggcgtgatttccggtgttgcaactttt
ggtatttttgtccagctggatgccttgtatatcgaggggctggtgcatgtgaccgaactt
ggcgcggattatttccaatacgatgaggcgcgccatgaattgcgcggggaacgcactggc
atccgttaccaacttaccgatcgggttacggtgcaagtcagccgggtcgacctggatgcg
cgcaagatcgatttgcgtctggtcaacgagccaggcatcaaaaccgtgctcaagaacgaa
gcgcgacgtgcggacaatgaacaaggccgtggcgccaagcccaaggctggcggcaaaggc
acgccccagaaaaccgcgagggtgacgacggctgctaaaaccacgcctgcaggtagggcg
accaaagccaagaaggtcaaggccgccggtcctgcggagaaggcgcgggcgccaaaggcg
ttcaccaagtccagcaagcgcaagcgatag
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