Collimonas arenae: LT85_2525
Help
Entry
LT85_2525 CDS
T03512
Name
(GenBank) Type IV fimbrial biogenesis protein PilY1
KO
K21449
trimeric autotransporter adhesin
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
care02000
]
LT85_2525
Transporters [BR:
care02000
]
Other transporters
Pores ion channels [TC:
1
]
LT85_2525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YadA_head
YadA_stalk
ESPR
Motif
Other DBs
NCBI-ProteinID:
AIY41683
UniProt:
A0A0A1FAB6
LinkDB
All DBs
Position
2834875..2843838
Genome browser
AA seq
2987 aa
AA seq
DB search
MQWFHCSVETITCGIPSKSKVIKMNKIFRVIWSQSTGQLCVVGELAKTRGKGRAAESSMF
SPPGTLTGGLFQLKALIIALAMALPMSGYAGTIYNSAGSGCGPTYTGADGTTFTAPGLAA
TNYQTDGNGYFSTVAGCGATGNNHLAVTLFGAGTQVTADYGTALGFMSIAGSVATAVGTQ
ANASGTDSVAVGALSIASAINASAFGRGAAASGTNSVALGAYANASAASDIAIGYQASAT
TGASAIAIGLGAVASSPVANTGDSLAVGTQAGATGQDSTAIGGQTTATATNAIAIGNNGT
TATGTGAIVIGVGASSTGTSSTALGTNSSATANYATALGGTGAAATIASGIGATAIGANA
TAGAAAAAPNSIAIGGQSAVAAANTSGIAIGRGATVNGAFGIAQGDGIVTGATGQNVAIG
SSGTTSNSGTAAGGAVAIGRGQKATGNGAVAIGDPNVSNGTGAVAMGANNIAAGDTGGAT
AANGAVAIGSGNNAIGQGSVALGNNSTASVAGGLALGDTAAAKGANGVALGSGATANNAN
DVALGNGSITAAPNPTATGTVGGVTYNYAGTTPTSVVSVGAPGSERQVTNVAAGRVTATS
TDAINGSQLFATNTAINSLSTSASTGLSTTNSNVASLSTSTSTGLSTTNSNVASLSTSTS
TGLSTTNSNVTSLSTSTSTGLSTTNSNVASLSTSTSTGLSTTNSNVTSLSTSTSTGLSTT
NSNVASLSTSTSTGLSTTNSNVTSLSTSTSTGITSLSTGLSTTNSNVISLSTSTSTAISA
AKTRYYSVNDNGTQQGNYNNTGATGINALAAGTNATAAGASAVAVGDGSTASANGAVAVG
QNATASNANAVALGSSSVTAAANPTATGTIGGVTYNYAGTTPASVVSVGAPGSERQVTNV
AAGQVTATSTDAINGSQLFATNTAINSLSTSTSTGLSTTNSNVASLSTSASTGITSLSTG
LSTTNSNVASLSTSTSTGLSTTNSNVASLSTSASTGITSLSTGLSTTNSNVTSLSTSTST
AISAAKTRYYSVNDNGTQQGNYNNDGATGVNALAAGTNATAAGASAVAVGDSSTASASGA
VAVGQNATASNANAVALGSGSVTAAANPTATGTIGGVTYNYAGTTPASVVSVGAPGSERQ
VTNVAAGQVTATSTDAINGSQLFATNTAINSLSTSTSTGLSTTNSNVASLSTSASTGITS
LSTGLSTTNSNVTSLSTSASTGITSLSTGLSTTNSNVTSLSTSTSTAISAAKTHYYSVND
NGTQQGNYNNDGATGVNALAAGTNATAAGASAVAVGDGSTASANGAVAVGQNATASNANA
VALGSGSVTAASNPTATGTIGGVTYNYAGTTPASVVSVGAPGSERQVTNVAAGQVTATST
DAINGSQLFATNTAINSLSTSTSTGLSTTNSNVTSLSTSTSTGLSTTNSNVTSLSTSTST
GITSLSTGLSTTNSNVTSLSTSTSTAISAAKTRYYSVNDNGTQQGNYNNDGATGINALAA
GTNATAAGASAVAMGDGSTASANGAVAVGQNATASNANAVALGSGSVTAAANPTATGAIG
GVTYNYAGTTPASVVSVGAPGSERQVTNVAAGQVTATSTDAINGSQLFATNTAINSLSTS
TSTGLSTTNSNVASLSTSASTGITSLSTGLSTTNSNVTSLSTSASTGITSLSTGLSTTNS
NVTSLSTSTSTAISAAKTHYYSVNDNGTQQGNYNNDGATGINALAAGTNATAAGASAVAV
GDGSTASANGAVAVGQNATASNANAVALGSGSVTAVANPTATGTIGGVTYNYAGTTPASV
VSVGAPGSERQVTNVAAGQVTATSTDAINGSQLFATNTAINSLSTSTSTGLSTTNNNVAS
LSTSASTGITSLSTGLSTTNSNVTSLSTSASTGITSLSTGLSTTNSNVTSLSTSTSTAIS
AAKTHYYSVNDNGTQQGNYNNDGATGINALAAGTNATAAGASAVAVGDGSTASANGAVAV
GQNATAGNVNAVALGSGSVTAAANPTATGAIGGVTYNYAGTTPASVVSVGAPGSERQVTN
VAAGQVTATSTDAINGSQLFATNTAINSLSTSTSTGLSTTNSNVASLSTGLSTTNSNVTS
LSTSTSTAINAAKTHYYSVNDNGTQQGNYNNDGATGVNALAAGTNATAAGASAVAVGDSS
TASASGAVAVGQNATAGNVNAVALGSGSVTAAANPTATGTIGGVTYNYAGTTPASVVSVG
APGSERQVTNVAAGQVTATSTDAINGSQLFATNTAINSLSTSTSTGLSTTNSNVASLSTG
LSTTNSNVTSLSTGITSLSTGITSLSTGLSTTNSNVASLSTSTSTAINAAKTHYYSVNDN
GTQQGNYNNDGATGVNALAAGTNATAAGASAVAVGDGSTASANGAVAVGQNATAGNVNTV
ALGVGAQATGSNSIAQGTGAIANSTGAIAIGQSATATGGQAVSIGVGNTASGNGAVAIGD
PNTATGTGAVAMGANNTATGQGAIALGNSSSAVGQGAVALGNNSMANAAGALAFGDTATA
NNAGDVALGSGSVTAAAVGTPSAVINGTTYNFAGATPTSTVSVGSVGNERTITNVAAGRL
SATSTDAVNGSQLSATNTAVNNISNTVNNISNGGGIKYFHANSTDPDSIAVGANSVAIGP
NAVSSIANSVALGANATTAAAVAVSSVTVGMTTFGTFAGSTPVGVVSVGSAGAARQVTNV
AAGQITATSTDAVNGSQLYSVASELNTAITNISNLSTGLSTTNSTLGGLSTTINNAGGNA
PVTSSEGSKFVGGVGAAGSNSLAVGTNATATGQNSTATGQGAMANAAATTANGAGASATA
ANATAVGAGTQATANNSVALGANSVANQANSVSVGSAGNERTITNVAAGVSPTDGVNVSQ
LTSGLGDAVTQANQYTNGIAMQLQNNINDVAKKAYAGVAAAMSLESAPYVPGKWTYAAGV
GYYQNQSALGISLRRTSDNAQWSISGGISGTTYGGVAARVGISGVLH
NT seq
8964 nt
NT seq
+upstream
nt +downstream
nt
atgcaatggtttcattgctcggttgaaaccattacatgcggcattccttcaaaaagcaag
gtgatcaaaatgaataaaattttcagagttatatggagtcaatccacaggtcaattgtgt
gtagtaggtgagttggcgaaaacacggggaaaaggccgtgctgcggaatcgtcgatgttt
tctccacccggcaccttgacagggggattattccaattaaaagctctgataattgcattg
gccatggcactgcctatgtctggatatgccggtacgatctacaactccgccggctctggt
tgtggccccacctacacaggtgcagatggtacgacctttacggcgcctggcttagcggct
acgaattatcagactgacggcaacggttatttctcaacggttgccggttgcggagccact
ggaaataatcatcttgccgtaactttgttcggtgcgggtactcaggtcaccgcggactac
ggtacggcattgggttttatgagcatagcaggaagtgttgcgacagcggtcggtacgcaa
gccaatgctagcggcaccgattccgtcgcggtcggggcgttatccattgctagcgccatc
aatgcttccgccttcggcaggggggctgcggcctcaggcacgaattcggtggctctcggc
gcctacgccaatgcgtcggcggccagcgatatcgcgattggatatcaagctagcgccacc
actggtgccagcgccatcgcgatcgggttaggggccgttgcttcttcacctgtcgccaac
actggcgatagtcttgcggtcgggacgcaggcgggggctactggccaggactctactgca
atcggcggccagaccaccgctaccgccaccaatgccatcgccataggcaataacggcacg
accgccaccggaacgggcgccatcgtcatcggcgtcggggctagttctacagggaccagt
tcaacagccttaggcactaacagcagcgctacggcgaattacgcgactgcattgggcggc
acaggcgccgccgctaccattgcctccggtataggtgccacggcaatcggcgcgaatgcg
accgcaggcgcagcggccgcggcgccaaattcgatcgccatcggcggccagtcagctgtc
gccgcggcaaacacttcaggcattgcgatagggcgcggcgccacagtcaacggcgccttt
ggcatagcacagggggacggtattgttaccggcgcgaccggccagaacgtcgcgatcggc
tcttccggcacgacttccaattccggcacggctgcaggcggtgctgtggcaatcggccgc
ggtcaaaaggccacggggaatggtgcggtggcgatcggtgatccgaatgtatcgaatggt
acaggtgctgtggcgatgggggcaaataacattgcagctggcgatacgggtggcgctact
gctgccaatggcgccgttgcaataggtagcggtaataatgcaatcggccaggggtcggta
gcgctgggtaacaacagtacggcgtcggtcgctggagggttggcgttgggcgataccgct
gctgcgaagggtgctaacggggtggcgttgggctcgggggcgacagcaaacaatgcgaac
gacgtggcgctggggaatggttcgattacagcagcgccgaacccgacggcgacggggact
gtaggcggtgtgacgtacaactatgcgggtacgacgccgacgagcgtggtgagcgtgggt
gcgccgggctccgagcgccaggtaacgaacgtggcagcgggccgggtgacggcgacgagc
acggacgcaatcaacggttcgcagctgtttgccacgaatacggccatcaatagcctgtca
acctctgcatcgacgggcctgagcacgacaaatagcaatgtggcctcgttgtcaacttcg
acctcgacaggtctgagcacaacgaacagcaacgtggcatcgctgtcgacctcgacctca
acaggtctgagcaccaccaacagcaacgtgacttcgctgtcgacctcaacctcaacaggt
ttgagcacaacgaatagcaacgtggcatcgctgtcgacttcaacttcgactggtctgagc
accaccaacagcaacgtgacttcgctgtcgacctcaacctcaacaggtttgagcacaacg
aatagcaacgtggcatcgctgtcgacttcaacttcgactggcctgagcaccaccaacagc
aacgtgacttcgctgtcaacttcgacgtcgactggcatcacgtcgctatcgacgggcttg
agcacgaccaatagcaatgtcatttcgttgtcgacctcgacctccactgcaatcagtgcc
gcgaagacgcgctattacagcgtgaacgacaatggtacgcaacaaggaaattacaataac
accggcgcaacgggtatcaacgcactggctgctggcacgaatgcaacggcggcaggcgcc
agcgcggtagcggtgggcgatggttcgaccgccagcgcgaacggagcggtcgcggttggt
cagaatgcgacggcgagcaatgcgaatgcggttgcattgggttccagctcggtgacagct
gcggcaaatccgacggctacagggacgattggcggtgtgacgtacaactatgcaggcaca
acgccagcaagcgttgtgagtgtcggtgcgccaggttctgagcgccaggtgaccaacgtg
gcggcgggccaggtaacggccacgagcacggatgcaatcaacggctcacagttgtttgcc
acgaatactgcgatcaatagtctgtcgacttcgacatcaacgggcttgagtacaactaac
agcaacgtggcatcactgtcgacttccgcctcgaccggtatcacttcgctgtcgacaggc
ctgagcaccaccaacagcaatgtggcatcgttgtcgacttcgacatcaacgggcttgagt
acaactaacagcaacgtggcatcactgtcgacttccgcctcgaccggtatcacttcgctg
tcgacgggcttgagcacgaccaatagcaatgtgacgtcgttgtcgacttcgacttccacg
gcaatcagtgccgcgaagacgcgctattacagtgtgaacgacaacggtacacagcagggc
aactacaacaatgacggcgcgacgggtgtcaacgcactggctgcaggtactaatgcgacg
gcggcaggcgccagcgcggtagcggtgggcgatagctcaacggccagcgcgagcggagcg
gtcgcggttggtcagaatgcgacggcgagcaatgcgaatgcggttgcactgggctccgga
tcggtgaccgctgcggcaaatccgacggcgacagggacaattggcggggtgacatacaac
tacgccggcacgacgccggcgagtgtggtgagtgtcggtgcaccgggttctgagcgccag
gtgaccaacgtggcggcaggtcaggtgactgccacgagtacggatgcgatcaacggctcg
cagctgtttgccacgaatacggcgatcaatagtctgtcgacttcgacatcaacgggcttg
agtacaactaacagcaacgtggcatcactgtcgacttccgcctcgaccggtatcacttcg
ttgtcgacaggcctgagcacaacgaatagcaacgtcacatcgctgtctacctcagcgtcg
actggtattacgtcgctatcgacgggcttgagcacgaccaatagcaatgtgacgtcgttg
tcgacttcgacttccacggcaatcagtgccgcgaagacgcactattacagtgtgaacgac
aacggtacacagcagggcaactacaacaatgacggtgcgacgggcgtcaacgcgctggct
gcgggcacgaatgcgacggcagcaggcgccagcgcggtagcggtgggtgacggttcaacc
gccagcgcgaatggtgcagtcgctgttggtcagaacgcgacggcgagcaatgcgaatgcg
gttgcactgggttccggctcggtgacagctgcgtcgaatccgacggcgacagggacgatt
ggcggtgtgacgtacaactatgcaggcacaacgccagcaagcgttgtgagtgtcggtgcg
ccaggttctgagcgccaggtgaccaacgtggcggcgggccaggtaacggccacgagcacg
gatgcaatcaacggctcacagttgtttgccacgaatactgcgatcaatagtctgtcgact
tcgacatcgacaggcctgagcaccaccaacagcaacgtgacttcgctgtcgacctcgacc
tcgacaggtttgagtaccacaaatagcaacgtgacttcgctgtcaacttcgacgtcgact
ggcattacgtcactatcgacgggcttgagcacgactaatagcaatgtgacgtcgttgtcg
acttcgacttccacggcaatcagtgccgcgaagacgcgctattacagtgtgaacgacaac
ggtacacagcagggcaactacaacaacgacggcgcgacgggcatcaatgcactggctgcg
ggcacgaatgcgacggcagctggcgccagcgcggtagcgatgggtgacggttcgaccgcc
agcgcgaacggagcggtcgcggttggtcagaacgcgacggcgagcaatgcgaatgcggtt
gcactgggttccggctcggtgacagctgcggcaaatccgaccgcgacaggggcgattggc
ggcgtgacgtacaactatgcaggcacgaccccggcgagcgtggtgagcgtcggtgcgcca
ggttctgaacgccaggtgaccaacgtggcggcaggccaggtaacggccacgagcacggat
gcgatcaacggctcacagttgtttgccacgaatacggcgatcaatagtctgtcgacttcg
acatcaacgggcttgagtacaactaacagcaacgtggcatcactgtcgacttccgcctcg
accggtatcacttcgctgtcgacaggcctgagcacaacgaatagcaacgtcacatcgctg
tctacctcagcgtcgactggtattacgtcgctatcaacaggcttgagcacgaccaatagc
aatgtaacttcgttgtcgacttcaacttccacggcaatcagtgccgcaaagacacactat
tacagtgtgaacgacaacggtacacagcagggtaactacaacaacgacggcgcgacgggc
atcaacgcactggctgctggcacgaatgcgacggcggcaggcgccagcgcggtagcggtg
ggcgatggttcgaccgccagcgcgaatggtgcagtcgctgttggtcagaacgcgacggcg
agcaatgcgaatgcggttgcactgggttccggctcggtgaccgctgtggcaaatccgacg
gctacggggacgattggcggcgtgacgtacaactatgcaggcacaacgccggcaagcgtg
gtgagcgtgggtgcgccaggctccgagcgccaggtgaccaacgtggcagcaggtcaggta
acggcgacgagcacggatgcaatcaacggctcgcagctgtttgccacgaatacggcgatc
aatagtctgtcgacttcgacatcaacgggcttgagtacaactaacaacaacgtggcatca
ctgtcgacttccgcctcgaccggtatcacttcgctgtcgacaggcctgagcacaacgaat
agcaacgtcacatcactgtctacctcagcgtcgactggtattacgtcgctatcgacgggc
ttgagcacgaccaatagcaatgtgacgtcgttgtcgacttcgacttccacggcaatcagt
gccgcgaagacacactattacagtgtaaacgacaacggtacacagcagggtaactacaac
aacgacggcgcaacgggcatcaacgcactggctgcaggcacgaatgcgacggcggcaggc
gccagcgcggtagcggtgggcgatggttcgaccgccagcgcgaacggagcggtcgcggtt
ggtcagaatgcgacggccggcaatgtgaatgcggtcgcactgggttccggctcggtgacc
gctgcggcaaatccgacagcgacaggggcaattggcggcgtgacgtacaactacgccggt
acgacgccggcgagcgtggtgagcgtcggtgcgccaggttctgagcgccaggtgaccaac
gtggcagcaggtcaggtgacggccacgagcacggatgcaattaacggctcgcagctgttt
gccacaaatacggcgatcaatagtctgtcgacttcgacatcaacaggtttgagcacaacg
aacagcaacgtggcatcactgtcgacagggttgagcacgaccaacagtaatgtgacgtcg
ttgtcgacttcgacttccacggcaatcaatgccgcaaagacacactattacagtgtgaac
gacaacggtacacagcagggcaactacaacaatgacggtgcgacgggcgtcaacgcactg
gctgcaggcacgaatgcgacggcggcaggcgccagcgcggtagcggtgggcgacagctca
acggccagcgcgagcggagcggtcgcggttggtcagaatgcgacggccggcaatgtgaat
gcggttgcacttggttccggctcggtgaccgctgcggcaaatccgacggcgacagggacg
attggtggcgtgacgtacaactatgcaggcacgaccccagcgagcgtggtgagcgtgggt
gcaccgggttctgagcgccaggtgactaacgtggcagcaggtcaggtaacggccacaagt
acggatgcgatcaacggctcgcagctgtttgccacgaatacggcgatcaatagtttgtcg
acctcaacctcaacgggtctgagtacgaccaacagcaatgtggcctcgctgtcgacaggc
ctgagcacgaccaatagcaacgtcacgtcgctatcgactggcattacgtcgctatcgact
ggcattacgtcgctatcgaccggcttgagtacgaccaatagtaatgtggcgtcgttgtcg
acctcgacgtccacagcgatcaatgccgcaaagacacactattacagtgtgaatgataac
ggtacgcagcagggcaactacaacaacgacggcgcgacgggtgtcaacgcactggctgca
ggtacgaatgccacggcagcaggcgccagcgcggtagcggtgggcgatggttctaccgcc
agcgcgaacggtgcggtcgcggtgggtcagaatgcgacggctggcaatgtgaatacggtt
gcactgggagtgggtgcacaggcgacaggtagcaattctattgctcagggaaccggtgca
atcgcaaattcaaccggtgcaatcgccatcggccaaagcgcgacggcgactggcggtcag
gctgtatcgatcggcgtcggcaataccgccagcggcaacggcgcggtagcgattggtgat
ccgaacacagcgacgggaacaggggcagtggcgatgggcgcgaataacacggccaccggt
cagggcgcaattgctcttgggaacagcagcagtgcggtcgggcagggcgctgtcgcattg
ggtaacaactcaatggcaaacgctgccggtgcactggccttcggcgatacggcaacggct
aacaatgccggcgatgtggcgctgggttcgggttcggtcacggcagcagcggtagggaca
ccaagtgcggtaatcaacggcaccacctacaactttgccggcgccacaccgacgtcaacg
gtcagcgtaggcagcgtaggcaacgagcgtaccatcacgaatgtcgcagccggccggctc
agcgccacaagtaccgatgccgtcaacggttcgcagttgagcgcgaccaacaccgccgtg
aacaacattagcaatactgtcaacaatatcagtaacggtggaggcatcaaatatttccat
gccaactccaccgatccggacagcattgcggttggcgccaatagcgtggcgatcggcccc
aacgcagtttccagcatcgccaattcggtggcgctgggcgccaacgcgacgacggcagcg
gcggtcgccgtgagttccgtgacagtggggatgactaccttcggcaccttcgctggtagt
acgccagtcggcgtggtcagcgtcggttctgccggcgcggcgcgccaggtgacgaacgtg
gcggcaggtcagatcacggcaaccagcaccgacgcagtgaatggcagccagttatattcg
gtggccagcgaactgaataccgcgatcaccaacatctcgaatttgtccaccggactcagc
accactaacagtactctgggaggcctgtcgacgacaatcaacaatgccggcggcaatgcg
ccggtgacatccagcgaaggcagcaagtttgtcggcggcgtgggagcggcaggtagcaat
tcgcttgcggtaggtaccaatgccacggctaccggccagaactcgactgccactggtcag
ggcgctatggcgaatgctgcagccacaacggcgaatggtgcaggggcgtctgccacagcc
gccaacgctactgcggttggggccgggacccaggcgacggcgaacaattcggtggcgtta
ggcgccaattcggtggccaaccaggcaaatagcgtctcagtcggctccgccggcaatgaa
cgcaccatcacgaacgttgccgctggtgtgagccctaccgacggcgtcaatgtgtcacag
ttgacctctggcctaggtgatgcggtaacgcaagccaaccaatacaccaatggaattgca
atgcaattgcagaacaacattaacgatgtcgctaagaaggcttatgccggtgtagccgcg
gcaatgtcgttggaaagtgcgccatatgtaccgggaaaatggacgtacgccgcaggtgtc
ggttactaccaaaaccaaagtgcactcggtatatcgttgcgtagaacctcagacaatgct
caatggagcatctcgggcggaatttctggcacaacttatggtggtgtagcagcacgagtc
ggtatctcaggagtgcttcattga
DBGET
integrated database retrieval system
