Collimonas arenae: LT85_3290
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Entry
LT85_3290 CDS
T03512
Symbol
prpR
Name
(GenBank) Propionate catabolism operon regulatory protein PrpR
KO
K02688
transcriptional regulator, propionate catabolism operon regulatory protein
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
care03000
]
LT85_3290 (prpR)
Transcription factors [BR:
care03000
]
Prokaryotic type
Helix-turn-helix
Other families
LT85_3290 (prpR)
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PrpR_N
Sigma54_activ_2
HTH_8
Mg_chelatase
AAA_5
AAA
AAA_2
HTH_17
HTH_11
HTH_23
AAA_7
HTH_psq
Xre-like-HTH
AAA_lid_6
HTH_50
RWP-RK
AAA_16
DUF6262
Motif
Other DBs
NCBI-ProteinID:
AIY42448
UniProt:
A0A0A1FCG8
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Position
3697873..3699513
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AA seq
546 aa
AA seq
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MPSPAPARRDASDAGNPGDKPVIWTVSVSRLSDLFRDITLEYDDRATIEPIDLGFDEAVR
YIRERMKTERCDAVISAGSNGAYLKSRLSVPVVIAKASGFDVLQALSRARRITPDIGIIT
YQSTMPALKEFQNAFGINIRQRDYATEEDARAQINELKASGVKAIVGAGLITDLAEEAGL
AAVFVYSAASIRQAFDDALEIAHLTRLESSHSRSKPVADTLRAKHGVNDLRGDSPAMETL
RQSIVLYAKSQATVLIQGETGTGKELVAQAIHRENPRALIGNKPFVAVNCGAIAESLLES
ELFGYEEGAFTGSRRGGHAGLFEAAHRGTLFLDEIGEMPLTLQTRLLRVLEEREVVRVGG
TRPIPVDVRIISATHCDLEQRIREGRFRADLFYRLAVLRLTLAPLRERPDDLIALAEWCL
KKALAALGARPHPNLHAEIVACAPLLSAHNWPGNAREVRNLMERLALFLAAEPLQALSPA
FIISVAPEFIQASMPTPAIAPATTSAAPEKAENITQVLARFGGNREAAAKYLGISRTTLW
RKIKNQ
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgccatccccagcccctgcccgacgtgatgccagcgatgccggcaaccctggcgacaaa
ccagtaatctggaccgtctctgtctcgcgcctgtccgacctgtttcgtgacattacgctg
gaatacgacgaccgcgcgacgatcgaacctatcgatctgggattcgacgaggccgtgcgc
tacatacgtgaacggatgaaaaccgagcgctgcgacgcagtgatctccgccggttccaac
ggcgcctatctgaaaagccggctatcggtaccggtcgtgattgccaaggccagcggcttc
gatgtgctgcaggcattgtcacgcgcacgccggatcactcccgacatcggcattatcact
taccagtcgacgatgccggcgctcaaggaattccagaatgccttcggcattaacattcgg
caacgcgactatgcaaccgaagaagatgcgcgggcgcaaataaacgaactcaaggccagc
ggcgtcaaggcgattgtcggcgccggcctgatcaccgaccttgctgaagaagccgggctg
gcggcagtattcgtctattccgccgcatcgatccgccaggccttcgacgatgcgctggaa
atcgcgcacctgacgcgactcgaatcgagccatagccgcagcaaacctgtggccgacacg
ctgcgcgccaaacatggcgtcaacgacttgcgcggcgattcgccggcaatggaaaccctg
cgccaatcgatcgtgctgtacgccaaatcgcaggcaacggtgctgatccagggcgaaacc
ggcaccggcaaggaactggtcgcgcaagcgattcaccgtgaaaatccgcgcgcgctcatc
ggcaacaagccatttgtcgcggtcaactgcggcgcgattgcggaatcgctgctggagtcg
gaattgttcggctatgaagaaggtgcattcaccggctcacgccgcggcgggcacgccggc
ctgttcgaagcggctcatcgcggcacgctgtttctggatgaaatcggcgaaatgccgctg
acgctgcaaacccgcttgctgcgggtgctggaagaacgcgaagtagtacgcgtcggcggc
acccggccgattccggtcgatgtacgcatcatcagcgccacccattgcgacctggaacag
cgcattcgcgaaggccgtttccgcgccgacctgttttatcgtctggccgtgttgcgcctg
acgctggcgccgctacgcgagcgccccgacgacctgatcgcactggccgaatggtgcctg
aaaaaagcactggccgccctgggcgcccggccgcatccgaacctgcacgccgagatcgtc
gcctgcgcacccttgctcagcgcccataactggcccggcaatgcgcgcgaagtacgcaac
ctgatggaaagactggcgctgttccttgcggcagaaccgctacaggcgctgtctcccgct
ttcatcatcagcgtcgcaccggaatttatccaggcttcgatgccaacacctgcaatcgcg
ccagcaaccacaagcgccgcaccagagaaggctgaaaacatcacacaagttctggcccgc
ttcggcggcaaccgcgaagcagcagccaaatacctcggcatcagccgcaccacactgtgg
cgcaagatcaagaaccaataa
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