Collimonas arenae: LT85_3345
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Entry
LT85_3345 CDS
T03512
Name
(GenBank) macromolecule metabolism; macromolecule synthesis, modification
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
care03019
]
LT85_3345
Enzymes [BR:
care01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LT85_3345
Messenger RNA biogenesis [BR:
care03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LT85_3345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
SRP54
ABC_tran
AAA_30
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AIY42503
UniProt:
A0A0A1FCM0
LinkDB
All DBs
Position
complement(3767211..3771092)
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AA seq
1293 aa
AA seq
DB search
MPPIVFPEELPVSGKRGEISAALSANQVIIVCGETGSGKTTQLPKICLELGRGLNGMIGH
TQPRRIAASSTAKRIAQELNSPLGEHVGYKVRFNDTLTKGAWIKLMTDGILLAETQTDPL
LRQYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDADRFARHFGADDKP
APVIEVSGRLYEVEVRYRPVDNADRSGVNPVATTAAAKPNAPQSAAQRDRDQRDLMDAVV
DAVDELARIGSGDVLVFLPGEREIRDAAEALRKHHPAHVEILPLFARLSAQEQERVFKVS
NARRIVLATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPIAQSAANQRAGR
CGRVAAGVCIRLYEEKDYLQRPKFTEPEILRSSLASVILRMKSLHLTDVETFPFIEPPPG
RAIADGYQLLQELGAVDDNNLLTKTGRQLAKLPLDPRVGRMILAALDNVCLSEMLIIASA
LSVQDPRDRPMEAQGAADQAHKKFADEKSEFLSYLKIWKWFEEAIEHKKTNRQLMDNCRA
NFLSQLRLREWRDVHSQLLTIVREQGWRLNEAPATYEQLHCALLTGLLGNVGFKADDDAH
YLGARAIKFYLWPGSSLSKKAGKWVMAAELVDTSRLYARCIAQIQPEWLEKVGAHLLKKS
YGEPRWEKRSAQVSASERATLYGLVVYSQRRINFGLINPTEAREIFIRDALVGGEFDTRA
PFFAHNQKLIREIENLEHKSRRLDVLVDDELIAAFYDKLIPADICNGITFEKWLKDVSVQ
TPKLLFLNRDELMRHEAAGITTELFPKVMRVAGIEMALSYHFEPGTPRDGVTLTVPLYAL
NQVYADRCDWLVAGMLKEKVHLLLKSLPQKIRRNCVPLPDYAAGFCERIQARHVFGHGNL
LDALMADIRAETTVATRSTDFKLETLPAHHSMNFKIVDEHGRQLDMGRNLSALQDEFGGQ
ARESFQKLAENTVVTSDALPVAASQTTQQGNAVKPVVKGADAAAAKPAGQYSMLTSWTFG
ELPELLEIQQGKQTLIGFPALVDKASHCDLEVFDDPNEAARIHRLGLRRLFALQLKEQLK
FLEKNIPGLQQMGMQFMALGSQEELRDQIISAGLERACLQAPLPKNAEQFAQRKDEGKSR
LGLLTNEIARLAGLILGEYHGLPKKLQGAKGHAQAVADIQVQLQLLVGKRFIADNDYGNL
THFPRYLKAVNVRLEKLRADPTRDGRLLTEWLQVASPWQRAQKDRGSKNSDPKMTEFRWL
LEELRVSLFAQELKTPMPVSAKRLQKVWETMQR
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcccatcgtatttcccgaagaattgccggtttccggcaagcgcggtgaaatctcg
gcggcgctgagcgccaaccaggtcatcatcgtctgcggtgaaaccggttcgggtaaaacc
acccagctgcctaagatttgcctggaactggggcgcggcctcaacggcatgatcggccat
acccagccgcgccggatcgccgcctcgtcgaccgccaagcgtatcgcgcaggaactcaat
tcgccgctgggcgagcacgtcggctacaaggtgcgtttcaacgacaccctgaccaagggc
gcctggatcaagctgatgaccgacggcatcctgctggccgagacccagaccgatcctctg
ctgcggcagtacgacaccatcatcatcgatgaagcgcatgagcgcagcctgaatatcgac
tttctgctgggttacctgaaacagctgctgcccaagcggcctgacctgaaagtcatcatt
acctcggcgaccatcgatgccgaccgtttcgctcgccatttcggcgcggacgacaagccg
gcgccggtgatcgaggtttccggtcgtctgtatgaggttgaagtacgctatcgtccggtc
gacaatgccgaccgcagcggcgtcaatcctgttgcaactacagccgcagccaagccgaat
gcgccgcaaagcgctgcccagcgcgaccgtgatcagcgcgatctgatggatgccgtggtc
gatgcggtcgacgagctggcgcgtatcggctccggcgatgtgctggtgttcctgccgggc
gaacgtgaaatccgcgacgccgccgaagcgctgcgcaagcatcatccggcccacgtcgaa
atcttgcctttgtttgcgcgcttgtcggcgcaagagcaggaacgcgtgttcaaggtttcc
aatgcgcgccgcatcgtgctggccaccaacgtcgccgaaacctcgctgacggtgccaggc
atacgctatgtggtggacgccggcctggcgcgggtgaagcgttacagctaccgcaacaag
gtcgaacagttgcagatcgaaccgatcgcgcagtctgccgccaaccagcgcgccggacgt
tgcggtcgcgtcgccgccggcgtctgtatccgtctgtatgaagagaaggattatctgcaa
cggccgaaattcacagagccggagattctgcgctcgtcgctggcttcggtcattctgcgg
atgaaatcgctgcatctgaccgatgtcgaaaccttcccgtttatcgaacctcctcccggc
cgcgctatcgccgacggctaccagctgctgcaagaactgggggcggtggatgacaacaac
ctgctgaccaagaccggccgccagttggccaagctgccgctggatccgcgcgttggccgc
atgatcctggcggcgctggacaatgtctgcctgagcgaaatgctgatcattgcatcggcg
ctgtcggtgcaggatccgcgcgaccgcccgatggaagctcaaggcgcagctgaccaggcg
cacaagaaattcgccgacgaaaaatctgaattcctgagctacctgaagatctggaaatgg
tttgaagaagccatcgagcacaagaaaaccaatcgccagctgatggataactgccgcgcc
aattttctctcgcagttgcgtctgcgcgaatggcgggatgtgcattcgcagctgctgacc
attgtgcgggagcagggctggcgtctgaacgaagcgccggccacctatgaacaattgcat
tgcgctctgctgaccggtttgctcggcaatgtcgggttcaaggccgacgacgatgcgcat
tacctgggcgcgcgcgccatcaagttctatctgtggccgggttcgagtttgtcgaagaag
gccggcaaatgggtcatggcggccgagctggtcgataccagtcgcctgtatgcgcgctgt
atcgcccagatccagccggaatggctggaaaaggttggcgcgcatttgttgaaaaaatcg
tatggagagccgcgctgggaaaagcgtagtgctcaagtgtcggcatccgaacgcgccacc
ttgtacggactagtggtgtacagccagcgccgcatcaatttcggcctgatcaatccgact
gaagcacgcgagattttcatccgtgatgcgctggtcggcggtgagttcgatacccgcgcg
ccgttctttgcccacaaccagaaactgatccgcgagatcgagaacctggagcacaagtcg
cgccgcctcgacgtgctggtagacgacgaactgatcgcggcgttctacgacaagctgatc
ccggccgatatctgcaacggcatcacgtttgaaaaatggctcaaggacgtcagcgttcag
acgcccaaactgttgttcctgaaccgtgacgaactgatgcggcacgaagcggcgggcatc
accacagaattgtttccgaaggtgatgcgcgtcgccggtatcgagatggccttgtcgtac
cacttcgagccaggcacaccgcgcgacggtgttaccttgacagtgccgctgtatgcgctg
aatcaggtctatgccgaccgctgcgactggctcgtggccggcatgttgaaggaaaaagtc
catttgctgctgaaatcgctgccgcagaaaatccgccgcaattgtgtgccattgcctgat
tacgctgccggtttctgcgaacgtatccaggcacgtcatgtgttcggccacggcaacctg
ctggatgcgctgatggctgacattcgcgccgaaaccaccgtcgccacccgcagcactgac
ttcaagctggaaaccttgcctgcgcatcattcgatgaacttcaagatcgtcgacgaacat
ggccgccagctggatatgggacgcaatctgtcggcgttgcaggacgagttcggcggacag
gcgcgtgagagtttccagaagctggctgaaaacacggtggtgaccagcgatgcgctgccg
gtagccgcatcacaaaccacgcagcaaggcaacgccgtcaaacctgtagtcaaaggagcc
gatgctgccgcagccaagccggcaggccagtacagcatgctgaccagctggaccttcggc
gaattgccggagctgctggaaatccagcagggcaagcagaccctgatcggcttcccggcg
ctggtcgacaaagctagccattgcgatctcgaagtgttcgatgatcccaatgaagcggcg
cgtatccaccgccttggcttgcgccgcctgtttgccttgcagttgaaagagcagttgaaa
tttctggaaaagaatattcccggcttgcagcagatgggcatgcagttcatggccctggga
tcgcaggaggagttgcgcgaccagatcatctctgccggcctggaacgtgcttgcctgcaa
gcgccgctgccaaagaacgccgagcaattcgcccagcgcaaggacgaaggcaagtcgcgg
ctgggtttgctgacgaatgaaatcgcccggctggctggcttgatcctgggggaataccac
ggcttgccgaaaaaactgcagggcgccaagggccatgcgcaggcggttgccgatatccag
gtgcaattgcaactgctggtgggcaagcgcttcattgcggataacgattacggcaatctg
acgcattttccgcgctacctgaaagcggtgaatgtccggctcgaaaagttacgcgccgat
ccgacgcgtgacggccgtttgttgacggaatggctacaagtggcgtcaccatggcaacgc
gcgcaaaaagaccgcggcagcaagaattcggatccgaagatgacggaattccgctggctg
ctggaagagctgcgcgtgtcgctgtttgcacaagagctgaaaacgccgatgccggtttcg
gccaagcgtttgcaaaaagtgtgggaaacgatgcagcggtag
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