Collimonas arenae: LT85_3954
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Entry
LT85_3954 CDS
T03512
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
care03016
]
LT85_3954
Enzymes [BR:
care01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
LT85_3954
Transfer RNA biogenesis [BR:
care03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
LT85_3954
Prokaryotic type
LT85_3954
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
AIY43112
UniProt:
A0A0A1FJN4
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Position
complement(4460142..4461152)
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AA seq
336 aa
AA seq
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MLVTAGRFCFSSPFFVFATMASRPPKRIRVPLNGVLLLDKPVGFSSNDALIKAKGLLNAQ
KAGHTGTLDPFATGVLPLCFGEATKFAQDLLDTDKTYETLIHLGVSTTTGDTEGEVQERK
DVNVSLEQIDAVLAQFRGPIKQVPPMYSALKRDGKPLYEYARAGIVLEREARDVTIHSLE
FLAYDAPFLRLRVSCSKGTYIRVLGEDIGAALGCGAHLQELRRTQVGHLTLEGCVTLEQL
SGTEAAERCTLLAPVDSLLLTFPEVLLSEALAKRFLQGQRLTLSKEGVALPEQGGRVRVY
QQPADEMSFRQLLGTAQLHEYGVLAPERLIATAQLI
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
ttgctggtaacggcaggccgtttctgcttttcttcacctttttttgtattcgctaccatg
gcatcacgtccacccaaaagaatccgtgtcccgctcaatggcgtattgctgttggataag
cctgtcggcttttccagtaacgacgcgctgatcaaggccaaaggcttgctgaatgcacag
aaggccggtcacaccggtactcttgatccgttcgccaccggcgtactgccgttgtgcttc
ggcgaagccaccaagttcgcccaggatttgctggataccgacaagacttatgaaaccttg
atccacctgggagtgagtactaccaccggggataccgaaggcgaagttcaggagcgaaag
gacgtcaacgtcagcctcgagcagattgatgcggtgctggcgcagttccgcggcccgatc
aagcaagtgccgccgatgtactcggcgctgaaacgcgacggcaagcctttgtatgaatat
gcacgcgctggtattgtcttggagcgcgaagcgcgtgatgtaaccattcactcacttgaa
ttcctggcctacgacgcgccgttcctgcgtttgcgggtaagttgcagcaaaggtacctac
atccgtgtcttgggcgaagatatcggcgctgcgctgggctgtggcgcacatttgcaagag
ttgcgccgtacccaggtcggccatctgacgctggaggggtgcgtcaccctggagcagttg
agcgggactgaagccgccgaacgttgtaccttgctggcgccagtcgatagcttgctgcta
acttttccagaggtattgctatcggaagcactggccaagcgctttttgcaaggccagcgc
ctgacgctgtcgaaagagggcgtagccttaccggagcagggcggccgagtacgggtctac
cagcagccagcggatgaaatgtcttttcggcaattactgggcaccgcgcagctgcatgaa
tatggcgtcctagcgcccgagcgcctgattgccacggcgcagctcatataa
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