Collimonas arenae: LT85_4108
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Entry
LT85_4108 CDS
T03512
Name
(GenBank) Type IV fimbrial biogenesis protein PilY1
KO
K02674
type IV pilus assembly protein PilY1
Organism
care
Collimonas arenae
Brite
KEGG Orthology (KO) [BR:
care00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
care02044
]
LT85_4108
02035 Bacterial motility proteins [BR:
care02035
]
LT85_4108
Secretion system [BR:
care02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
LT85_4108
Bacterial motility proteins [BR:
care02035
]
Pilus system
Pilus assembly proteins
LT85_4108
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
T4P_PilY1
Motif
Other DBs
NCBI-ProteinID:
AIY43266
UniProt:
A0A0A1FFK2
LinkDB
All DBs
Position
complement(4618225..4623483)
Genome browser
AA seq
1752 aa
AA seq
DB search
MCRQSFRCKRNAVELIKKQHCVCSNMCFNIQENALTNNRSFRTFSSLLITLAFSASAHAG
QTDISTDPLNTYSAPSSTDVKPNVFMVLDDSGSMNWDFMPDWACSPTYSTRSGGDCSSAG
QTASSADQEYLFRNAGYNGIYYNPAVVYKPPVAVDSTGAVNSTTFPSMTGADSTTGANSG
TKPNWKAVGDDAYGVQSSLSSTSDLQSTPQYFYTTVAGEYCTSASLRKCITASAATTVSG
VAYNFPAVLRWCDSSALTNCQAAFSSNFSYARAPSPRTTSFSVSSILTGATVSSIKVNGL
QILSGAVTAASTSSSNMAAAIAASINACNGSISGICGVAGYGATASGSVVTITAGINTVA
TPVLSKTGTITLSSPAAFSTSPVPGYSLLAVITAGTVAVFPFPGQTGKAVTRTDCAGTLC
TGNEEMTNYANWWTYYKSRMQMMKTSASNAFAAIDKATDIANGVSRFRVGYMSINNNTGG
DFVNLAEFTGAQKYNWYNAFTSAIPGNSTPLRAALSKAGRLYAGKLNGQTLNGSTVVDPL
QYSCQQNYTILSTDGFWNENSGFYKMNGSTSVGNQDAGLPRPYYDGGSAQIQSSTSNLQS
QTVTPQPQTSTSTLQSQTISPQWQTSTNQLQSDTQQLQKRTSSNSGSKWTSWANATSCIP
VTSGKNQTQCQTLDSGWVAVTSCTASSTSSTTISCQYAGWSAYSNSSPNSCTAVAPSTGP
TSYSVGTAVQCQTSGVVLGTWQTASSCTASSASNCRYTAWTAYNNTASCTPTAQSVGPAY
TVGTAYQCQSGPTPILGTWVNASSCTASSTSNCQYTAWSTPANASSCTALAQSTAPNYTV
GTAMQCSTVNSGGTSNTLADVAAYYYNTDLRSSDTTQGTGTCTGPTISPSTTPNDLCADN
VPSNGRDVATTQHMTTFTLGLGSQGQMIYAPTDGKDYWNDTSGDFYDVYKGTTANTSAGI
CSWQTSGVCNWPTPASNSNTNIDDLWHAAVNGHGTYFSAANPSALANGLTSALATIINTP
RPGTAAAAASSNPNVSAADNYVFSSSYKSVDWYGELIRQQLSTTGTLGAQNWSAMTLLDC
ATTPWRASTSYIIGNVFRQGTNCYTVVNGYSSGTTFNGAATGVDGMNTKVVNVDGAATTP
VAVTAPTSRTIYTKGTIGSTTGLITFDWATLQSAGLDSNFTAPHISYVSGAAPTGLTQFC
TSGGNCLSSAAQSNNTIATGGASGEALVNFLRGDRSNEGTYFRTRAHVLGDIVSSEARYV
QTPLFSYADTNYAAFKTSSAITSRVGAVYVGANDGMVHAFDASSGKELWAYIPSMVLPNM
YNLADKNYATLHQFFVDNSPETGDICPNAPASTCTSAQWKSILVGGLNRGGKGYYALDVT
DPTTPKLLWEFTNTNLGYSYGNPKITKLSDGTWVVLLSSGYNNADGLGHLYVLNANTGAT
IRDIVTSAGSTATPSGMARISAHSVQALTDNTSIAAYGGDTLGNLWRFDINGNIGASGYD
AQLLVSFKDAAGNPQPITAAPLEATVNGNPVVYVGTGRYLGTTDVADTSIESFYAVLDKS
DANTYTNPRVPTSTSKFVQQTLTAKTCPANSPVSLCTPGQVVRTSSNNPVDWTTNTGWYI
DFLTGGERASTDPSLALGTLVFTTITPQVSTVSACGATDPNVSGSFLYALNYLTGAAVDG
ASGVSGFNLGASLVTRPVMIEQADGTVRVLIRSANGTSTGTDLGGTIITTPPIKPSATSN
TRRVSWRVLTTQ
NT seq
5259 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaggcagtcgtttcgatgtaaacggaacgccgttgaactgattaaaaaacaacat
tgcgtgtgcagcaacatgtgcttcaatattcaggagaatgccttgaccaacaaccgatcg
ttcagaacattcagcagcttgctgattactctggcattcagcgcatctgctcacgcgggg
cagaccgacatttcaactgatccgttgaacacttactcagcaccttcaagcaccgatgta
aagccaaacgtatttatggtgctggatgattcgggcagtatgaactgggacttcatgcca
gactgggcatgctctcctacatactcgacacgcagcgggggagattgttcatcagctgga
caaactgcaagctcggcagatcaggagtatttattcaggaatgccggttataacggtatt
tattacaatccggccgttgtctacaagccacctgttgccgtcgatagcactggtgctgtc
aactctacgacttttcccagcatgacgggagcggattccactactggagcaaattccggt
accaagccaaattggaaggctgttggagacgatgcatatggcgtccagagcagtttgtcg
tcaacatcggaccttcagtctaccccacagtatttttatactactgtagccggagaatat
tgcacttcggcgagcttgagaaaatgtattacagctagtgccgctaccaccgtcagtgga
gtggcttacaattttcccgccgttttgcgatggtgcgacagcagtgcattgaccaattgt
caagcggcttttagttcaaacttctcctatgctcgcgcaccgtcgccgcgaacgacgagt
ttttcggtcagcagcatcttgaccggcgcgactgtgagcagcatcaaggtaaatggacta
caaattttatccggtgctgtcactgccgcatctacttcttcgtcaaatatggcagctgct
atcgccgcaagcatcaatgcttgtaacggatcgatttcagggatttgcggagtggctggc
tatggagcgaccgcctcaggcagtgttgtgacaatcactgcgggaatcaacacagttgcc
acaccggtgctgagcaaaaccggtacgattactctttcttctcctgctgcctttagcact
agtccagtacctggatatagtttgctagctgtcattaccgctggcaccgttgcagttttt
ccttttcccggacagacaggcaaggccgtcactcgaacagattgcgctgggacactttgt
acaggcaatgaggaaatgaccaactacgcgaactggtggacctattacaaatcgcgcatg
cagatgatgaaaacctctgcgagcaacgcatttgccgcgatagacaaggcaaccgatatc
gcgaatggtgtctcgcgttttcgcgttgggtatatgagtattaacaataataccggtggt
gattttgttaatcttgctgaattcacaggcgcgcagaaatataactggtacaacgcgttt
accagcgcaatacctggcaactcgactcctttgcgtgcagccttgtcaaaggccggccgg
ctttatgccggcaagcttaatggacagacacttaacggttctactgtcgttgatccgctg
cagtattcatgccagcaaaactacaccattctttctacagacggcttctggaatgaaaat
tcgggattctacaaaatgaatggctcgacgtcggttggcaatcaggatgcaggtttacct
cgtccctattacgacgggggcagtgcccaaatacaaagcagtaccagtaatttgcagtcg
cagacggttacgcctcagccgcagactagtaccagcacattgcagtcgcagacgatcagt
cctcaatggcaaaccagcactaatcagttacagagtgatacacagcaattacagaagaga
acttcaagtaattcaggttctaaatggacatcttgggctaacgcaacgtcatgtataccg
gtaaccagtggtaaaaatcaaacgcaatgtcagactcttgattctggttgggttgctgtt
accagttgcactgcgtccagcacttcgtcaaccacaatcagttgtcaatatgcaggttgg
tctgcctatagcaacagtagcccaaattcgtgtacggctgtagcaccgtcgaccgggccc
acttcttattcagtaggtacggcagttcagtgccagacttcgggtgtagtcctcgggaca
tggcaaactgcatcgtcgtgcacagcatcaagtgctagtaattgtaggtataccgcttgg
accgcatataacaatacagcttcgtgtacgcctacggcacagtctgtcgggcctgcttat
acagtgggcaccgcatatcaatgtcagagcggcccaacaccaatactcggaacatgggta
aatgcatcttcatgtacggcctcaagcacgagtaactgtcagtatacggcttggagtaca
cctgcgaacgcaagctcttgcaccgccctggcgcaatccacagctcccaactatacggta
ggcaccgcaatgcagtgctctaccgtgaactcaggtggaacctcgaatactctggctgac
gtggcagcttattactacaacaccgatttgcgtagctccgatacaactcaaggtactgga
acttgcaccggtccaaccatctcgccgtcaacgaccccgaatgacttgtgtgcggacaac
gtgccgtcaaatggtcgtgatgttgccaccactcagcacatgacgacatttacgcttggc
ttgggctcgcaaggtcagatgatttatgcgcctacagacggcaaggattattggaatgac
accagcggcgatttttatgacgtatataagggaacgactgcaaatacaagcgcgggtatc
tgttcttggcagactagcggagtatgtaactggcccactccagcgtccaattccaatact
aatatcgatgacctatggcatgcagcggttaatggacatggtacgtatttcagtgcagct
aacccttcggcgctcgccaacggtcttacatcggctctcgcaacgatcatcaatacgcca
cggccaggtaccgccgctgccgctgccagcagtaatcccaacgtgagcgctgctgataat
tacgtatttagttcttcctacaagtctgtcgattggtatggagagctgattcgtcagcaa
ctgagtactacaggtactttgggcgcccaaaactggtcggcgatgacgctgcttgattgc
gcaaccacaccatggagggcatcgacaagctacatcattggcaatgtattccgccaagga
acaaactgctatacggtcgtcaacggttactcttcaggcactacgttcaatggtgctgcc
actggtgtcgacgggatgaataccaaggtggttaatgtcgatggtgccgccactacgccg
gttgccgtgacagcgccgaccagccgaaccatctataccaaagggacaattggttcaact
accggactcataacatttgactgggctaccctgcagtccgccggactggattcaaatttc
actgcgcctcatattagctatgtttcaggagcagcgccaacggggttgacgcagttctgc
acctctggtggcaattgcctgagcagcgccgcacaaagcaataacacgattgcgactggc
ggcgcgtccggcgaggcgctggtcaacttcctgcgtggcgaccgcagcaatgaaggtaca
tacttccgcacacgggcacatgtcctgggcgacattgtttcttcagaagccagatatgta
caaacgccgctgttcagttacgctgatactaattacgctgcattcaaaacctcaagcgcg
attacatcgcgcgttggagctgtctatgtcggcgcgaatgacggcatggtgcatgccttt
gacgcttcgtccggcaaagaattgtgggcctacataccgagcatggttttgccgaacatg
tacaacttggcagacaagaattacgccacattgcatcaattcttcgtcgataactcgccg
gaaaccggcgatatctgcccgaatgctccggcgtcaacctgtaccagcgcacagtggaag
agtattctggtaggcggtctgaaccgcggaggaaaaggctactatgcattggacgttacg
gatccgacgacgccaaaattgttgtgggagtttaccaataccaacttgggctattcctat
ggcaatccgaaaatcaccaaacttagcgatggtacgtgggtggtattgctgagttccggt
tataacaatgcagatggcctcggtcacctctacgtgttgaacgctaataccggtgctacc
atccgggacattgtcacgagcgccggtagtacagcgacccccagcgggatggcgcggatc
agcgcccattcggtgcaagcactgactgacaatacgtccatcgcagcgtacggcggcgat
acattgggtaatctgtggcgcttcgacatcaacggtaatatcggcgccagcggctacgat
gctcagttgctagtcagttttaaagatgcggcaggcaatccgcaaccgattaccgctgca
ccgctggaagcgacagtcaatggcaatccggtggtctacgtaggaaccggccgttatttg
ggcaccactgacgtcgccgatactagcatcgagtcgttctatgctgtcctcgataaatcg
gacgcgaatacttataccaatccgcgagtaccaaccagcaccagcaagtttgttcagcaa
accttgactgctaaaacgtgcccggcaaactcgccggtctcgctttgcactccgggtcaa
gtggtgcggacaagtagcaacaatccagtcgattggacaaccaataccgggtggtacatt
gattttctgacggggggggagcgtgccagtactgatccatcgcttgctctcggtactttg
gtgttcacgacgattacgccacaagtttcgactgtcagcgcttgcggagcgaccgatcca
aatgtttcgggcagcttcctttacgcgctgaattacctgaccggcgctgcagtagatggc
gcttccggagtgagtggtttcaatttaggtgcaagtctggtgacgcgacctgtaatgatc
gagcaggccgacggcactgtccgggtgctgattcgttcggcgaatggcacctcgacgggc
accgatctaggcggtacgattatcacgacgcctcctatcaagccgtctgcaaccagcaac
actcgacgggtttcatggcgagtattgacgacgcagtag
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