Collimonas arenae: LT85_4913
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Entry
LT85_4913 CDS
T03512
Name
(GenBank) ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
care
Collimonas arenae
Pathway
care03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
care00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LT85_4913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
care03000
]
LT85_4913
03400 DNA repair and recombination proteins [BR:
care03400
]
LT85_4913
Enzymes [BR:
care01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LT85_4913
Transcription factors [BR:
care03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LT85_4913
DNA repair and recombination proteins [BR:
care03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LT85_4913
SSDB
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Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
Motif
Other DBs
NCBI-ProteinID:
AIY44071
UniProt:
A0A0A1FHL1
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All DBs
Position
complement(5485439..5487028)
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AA seq
529 aa
AA seq
DB search
MRLIDFHRRCRIYCRNAHVRKPLDTASRWRDHAAMELDHDTCYRALASRDVRFDGRFFIA
VKTTGIYCRPICPARTAKSENVLFFASAAAAQEAGFRPCLRCRPEAAPDSGAWRGVSNTG
VSHAVARALALIEMGALDEAGMDALADRLGLGERQLRRLFVQHVGASPVTVAQTRRVLLA
KQLIHETRMPFTEIAFAAGFGSVRRFNEVFHGLYQRPPSALRRSAQPEQSAGAQGEVTLL
LRYRPPYDWPAMLAFFKARAINGLELVSDSSYSRSICLDGVQGTVLVQQGAGHALQATIR
FPRLASLPAIIARLRRMFDLAADPQAINQQLSADPLMAALTAARSGLRLPGAWDGFELAM
RAVLGQQITVAGAIRLAAKLVAQHGEALREQCADRPGLSHVFPQPAHVALADLALLGMPK
SRAATLSAIAAALVADPQLLDGRASLGEAVQKMCELPGIGDWTAHYIALRHLREPDAFPA
ADVALMNAIALHEGGTRPNAKELAIRAEAWRPWRAYAAQHLWASLAVNG
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgattgattttcaccgtcgctgccgtatttattgtcgcaatgctcatgtccga
aaaccgctagacactgccagccgatggcgcgatcatgccgccatggaactcgatcacgac
acctgctaccgggcgctggccagccgcgatgtgcgctttgacggcaggttctttatcgct
gtcaaaactacgggtatctattgccggccgatttgcccggcacgcaccgccaaatcggaa
aacgtcttgttttttgccagcgccgccgcagcccaggaagccggtttccgtccttgtttg
cgctgccgacccgaagccgcgcccgactccggcgcctggcgcggtgtctcgaatacaggc
gtctcgcatgctgtggcgcgggcgttggcgctgatcgaaatgggggcattggatgaggcc
ggcatggatgcgctggcagatcgtctcggtctgggcgagcggcagctgcgccgtctgttt
gtgcagcatgtaggcgcatcgccggtcaccgtggcgcagacccgccgcgtattgctggcc
aagcagctgatccacgaaacccgcatgcccttcactgaaatcgccttcgctgccggcttc
ggcagcgtgcgtcgttttaacgaagtgttccatggcctgtatcaacgtccgcccagcgcc
ttgcggcgtagcgcccagcccgaacaatcggccggcgctcaaggcgaggtgacgctcctg
ctacgttaccgtccaccttacgactggccggccatgctggcctttttcaaggcgcgtgcc
atcaacggcctggaactggtgtccgacagcagttattcccgcagcatctgtctcgacggc
gtgcaaggcacggtgctggtgcaacagggcgccggccatgcgctgcaagccaccattcgt
tttccgcggctggcgtcgctgccggccatcatcgcccgcctcagaagaatgttcgacttg
gccgccgatccgcaagccatcaaccagcaattgagcgctgatcctttgatggcggcactg
accgcagcgcgctccggcttgcgcctgccaggtgcctgggatggttttgaactggcgatg
cgcgccgtgctggggcagcagattaccgtagccggtgcgatccggctggccgccaaactg
gtggcgcaacatggcgaagcgctgcgggaacaatgcgcggatcgtcccggcctcagccat
gtatttccgcaacctgcgcacgtcgcattggcggatctggcgctgctaggcatgccgaaa
tcgcgcgcggcaaccttgtcggcgatagcggctgcgttggtagccgatccgcaattgctg
gatggccgcgccagcctgggcgaagcggtgcaaaagatgtgcgagctgcccggcatcggc
gactggactgcgcactacatcgcattgcggcatttgcgcgaaccggatgcgtttccagcc
gcggatgtggcgttgatgaatgcgattgcgctgcatgaaggcgggactcggccaaatgcc
aaagagctagccatacgtgcagaagcctggcggccctggcgcgcctatgcggcgcagcat
ctttgggcttcgctggctgtcaatggctga
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