Clostridium argentinense: RSJ17_03605
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Entry
RSJ17_03605 CDS
T05123
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
carg
Clostridium argentinense
Pathway
carg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RSJ17_03605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carg03021
]
RSJ17_03605
03400 DNA repair and recombination proteins [BR:
carg03400
]
RSJ17_03605
Enzymes [BR:
carg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RSJ17_03605
Transcription machinery [BR:
carg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RSJ17_03605
DNA repair and recombination proteins [BR:
carg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RSJ17_03605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ARC83670
LinkDB
All DBs
Position
639152..642685
Genome browser
AA seq
1177 aa
AA seq
DB search
MFELNNFDAIQIGLASPEQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPMKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKTKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRSLEKVLYFASYVVLDPKDTGLDKKQILTEKDYREAIDKYGYDGFVAGMGAESIKVLL
QDIDLDELATELKEDLKTSSGQKRVRSIRRLDVVESFRKSKNKPEWMIIDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVETGVAHNIKSAKRMVERVMPQVWDVLEEVISDHPVLLNRAPTLH
RLGIQAFQPILVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAHNI
LKPSDGKPVCVPTQDMVLGSYYLTLDKDGAKGEGRMFSSPNEVYMAYQVKDIDIHAKIKV
KMSKIKDGKLITGIIDTTPGKLIFNESIPQNLGFIDRSKPENEFKLEIDFLASKKNLGKI
IDRCYLKYGATETSKMLDNIKAKGYHFSSIGAITVATSDMEVPAAKETLLAETDAAVDKI
DKMYRRGFISEDERYERVIDKWTKTTEDIANALMDSLDKFNPIAMMADSGARGSKSQIKQ
LAGMRGLMANPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVRHEDCGSTEGFEVSEIKEGSEVIEPLSERLTGRYSAEDIINPKTGEVIVP
RDTYMDIHLAEEVESTGIKKVKIRSVFTCKSKIGVCSKCYGMNMATAQKINIGESVGIIA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSDVAGAARIEET
KKKRTVVITTNEGEEFSYDIPFGSRIKVLNGDTIGAGDEITEGSVNPHDIIRIKGVNGVK
NYLLSEVQKVYRLQGVDINDKHLEVVIRQMTRKVKIEESGDTDLLPGTMIDIFDFEEENE
RILAEGGMPSEGKITLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDNLVGLKEN
VIIGKLIPAGTGMTRYRTIKISTEKENEEILTEDLQA
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaattaaataattttgatgcaatacaaatagggctagcttctccagaacagatc
agagagtggtctagaggagaggtaaaaaaacctgaaacaataaactatagaactttaaaa
ccagagagagatgggttattctgcgaaagaatatttggacctatgaaagactgggaatgt
cattgcggaaaatacaagagagttagatataaaggaatcgtttgtgacagatgtggtgtt
gaagttactaaaacaaaagtaagacgtgaaagaatggggcacatagaacttgctgctcct
gtatcacacatatggtattttaaaggaataccatcaagaatgggattaattcttgatatg
tcaccacgatctttagaaaaagttttatattttgcgtcttatgtagttctagatccaaag
gatacaggattagataaaaagcagatattaactgagaaggactatagagaagctatagat
aagtatggttatgatggatttgttgctggaatgggagcagaatcaatcaaagttttactt
caagatatagatcttgatgagttagctactgaattaaaagaagatttaaagacaagtagc
ggacaaaaaagagtgagaagtataagaagattagatgtagttgaatcctttagaaagtca
aaaaataaacctgaatggatgattattgatgttataccagtaataccaccagatttaaga
ccaatggttcaactagacggaggtagatttgctacatctgatttaaatgacctttataga
agagttataaacagaaataacagattaaagaaactgttagacttaggtgctccagatatc
attgttagaaatgagaagaggatgcttcaagaagctgttgatgctcttatagataatggt
agaagaggaagaccggttacaggtccaggaaatagaccgcttaaatcattatcagatatg
cttaaaggtaagcaaggaagatttagacagaaccttcttggaaaacgtgttgactactca
ggacgttccgttatagttgttggtccagaattgaaaatgtatcaatgtggacttccaaaa
gaaatggctcttgaattattcaaaccatttgttatgaagaaattagttgagactggagtt
gcgcataacataaagagtgcaaagagaatggttgaaagagtaatgcctcaagtatgggat
gtattagaagaagttatatctgatcatccagtattactaaaccgtgcccctactttgcat
agattaggtattcaagccttccaaccaattttagttgaaggaagagctataaagttacat
ccacttgtatgtacagcatacaacgctgactttgacggagaccaaatggcggtacacgta
ccactatcagttgaagcacaggcagaagctagatttttaatgttagcagctcataatata
ttaaaaccatctgatggaaaacctgtttgtgtacctacacaggacatggttttaggctca
tattatttaactctagataaagatggagctaagggtgagggaagaatgttctcttcacca
aacgaagtttatatggcatatcaagttaaagatattgatatacatgcaaaaattaaagtt
aaaatgagtaagattaaagatggtaagctaatcactggaatcattgacactactccaggt
aagctgatatttaatgaatctattccgcaaaatttaggatttattgatagaagtaaacca
gaaaatgagtttaagcttgaaattgatttcttagcaagtaagaagaatttaggtaagatt
atagatagatgttatctaaaatatggtgctactgagacatcaaaaatgttagataatata
aaggcaaaaggatatcacttttcatcaataggagctataactgttgctacttcagatatg
gaagttccagcagctaaggagaccttactagctgagacagatgctgctgttgataagata
gataaaatgtacagaagaggatttatatctgaggatgaaagatatgaaagagttatagat
aagtggactaagactactgaagatatagctaatgcccttatggatagtttagataaattt
aacccaatagcaatgatggctgattcaggagccagaggttctaagagtcagattaaacag
cttgctggtatgagagggcttatggctaacccatctggtaaaattatagagttaccaatt
agagcatcattcagagaaggtcttgatgtattagaatatttcatatctactcacggagct
agaaaaggtaacgccgatacagcacttaaaactgcagattcagggtatctaacaagaaga
cttgttgacgtaagccaagatgttattgtaagacatgaggactgtggttctacagaagga
tttgaagtaagtgaaatcaaagaaggaagcgaagtaatcgaacctttaagtgaaagactt
actggaagatatagtgcagaagatataattaatccaaaaacaggagaagttattgtccca
agagatacttacatggatatacaccttgcagaagaagttgaaagtacaggaattaaaaaa
gttaaaataagatctgtatttacatgtaaatctaagataggtgtttgttctaaatgttat
ggtatgaacatggctactgctcaaaaaattaacattggagaatctgttggtattatagct
gcacaatctataggtgaaccaggcacacagcttacaatgagaactttccacacaggagga
gttgctggagcggatattactcaaggtcttccaagggttgaagagttatttgaagctaga
aaacctaaaggattagcaattgtaagtgatgttgcaggtgcagcgagaattgaagaaact
aagaaaaagagaacagttgttataactacaaatgaaggggaagaatttagctacgatatc
ccattcggctcaagaatcaaagttttaaatggagacacaattggagctggagatgaaatc
actgaaggttcagttaacccacatgatatcatcagaattaagggagtaaatggagttaaa
aactatcttctttcagaagttcaaaaagtttatagacttcaaggtgttgatatcaatgat
aaacacttggaagttgttataagacaaatgactagaaaagttaaaatagaagagtcagga
gatactgatttattaccaggaacaatgatagatatatttgactttgaggaagaaaatgaa
agaattcttgctgaaggtggaatgccatcagaaggtaaaataacattgcttggaataaca
aaagcagcacttgctactgattcatttttatcagcggcttcattccaagaaactacaaga
gttcttactgatgcggctatcaagggcaaaattgataatctagtgggattaaaggaaaat
gtaattattggtaaattaatcccagcaggaacagggatgactcgctatagaacaattaag
atttctacagaaaaagaaaatgaagaaatcttaactgaggatttgcaagcatag
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integrated database retrieval system
