Clostridium argentinense: RSJ17_05345
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Entry
RSJ17_05345 CDS
T05123
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
carg
Clostridium argentinense
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
carg03400
]
RSJ17_05345
Enzymes [BR:
carg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSJ17_05345
DNA repair and recombination proteins [BR:
carg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RSJ17_05345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
AAA_12
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ARC83993
LinkDB
All DBs
Position
1013086..1016808
Genome browser
AA seq
1240 aa
AA seq
DB search
MSSKEETKVSWTREQLAAINTRGANLLVAAAAGSGKTAVLVERIIKMITDRDNPVDIDRL
LVVTFTNAAASEMRERIGEAISKGIYKNPNSKSLQRQLTLLNKASITTIHSFCLEVIKTN
FHMIDLDPSFRVADETEAILLKQEALDEVFEEMYDKDDKLFLKLVECYCNNKNDSQLFDM
VLNLYNFAMSSPSPIEWLKEKADVFNVSDSFSFQDSKLGQALLKDVRIELESIVSSMNIA
REIVNNTPSLLSYQENISPEYEMIRRLYESSNSFEDLKCSFENVSFSKLATIRGCKDKVE
QEEVKKIRDNAKKKVNELSNTIIQASSKKSIEDLKYLYPLMDKLSELVIKMKEVYDKKKK
ERALIDFNDFEHFALEILTEKNDEGKIIPSKVAEELREKYEEILIDEYQDSNYVQEYILT
MISRNPLGENNIFMVGDVKQSIYRFRMAKPELFLHKKNTYSEEEDADEIIIKLYKNFRSR
EEVINATNFIFKHIMSNNVGELEYTEEEALNLGADYKPLEDDGIVGGPVEIMLFEKNKDV
EEIEEEDSEPLTNIQIEARAVGNRIKELTNIESGFKVFDKNTKNYRNVEYKDIVILLRAT
SEYAPVFSEELKNLGIPVYADTSEGYFNTLEIQIMISLLQIIDNPRQDVPLLAVLRSPIG
GFSAENLVDIRINSPETTVYEAMSSYLNDEENLELKKKVEKFLEKLVHWRNRSLITPIDE
FIWYLYMDTGYYGYVGAMPAGIQRQANLRILFQRARQYENTSYKGLFNFVNFINKLKVSS
GDLGTAKTIGENENVVRIMSIHKSKGLEFPVVFLSAMGKNFNRMDSRKKVLFHHDLGFGP
ELVDIEKRISYSPTVKEILKSKINIESLSEEMRVLYVAFTRAKEKLILTGTCRDFDKSIE
NWTSVARNSEDKILEGYLLKGNSYLDWVMPCVIKHKDGELLRNYLKINEESVGLVQDNSK
WNVKLMNYKDLDIEEDIAKLEAIDIKEKLKEIELKEINIHYREEIEKRLNFKYKYEASTK
IPTVLTVSELKRTYNQSLNDEFVNTNYIPTIVRKPIFLEEKRGLTPAEKGIAMHSAMQRL
DLNNINSKEDIISQIENMVIKEMITEEQAKSIRVEKILNFFNTSLGERVLIAHNKTKVYR
ETPFSIEISSTEIDESLDKKVYEKENIIVQGIIDGYFEEDGEIVLFDYKTDYVRNGDTAS
IVEKYKSQIDYYARALEKILGKKVKERYLYLFSIDSEVIL
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtaaagaagaaacaaaagtaagttggactagagagcagttggctgcaattaac
acaagaggagcaaatttattagttgcagcagctgctggttcaggaaaaacagcagtttta
gttgaaagaatcataaagatgataacagatagggataatcctgttgatatagatagactt
ttagttgttacttttacaaatgctgctgcctctgagatgagagaaaggataggagaagca
atttcaaaaggaatttataagaatcctaattctaagagtctacaaaggcagttgactctt
ttaaacaaagcaagtattactactatacattctttttgtcttgaagtaataaaaacaaac
tttcatatgatagatttagatccgtcctttagagttgcagatgagacagaggcaattctt
ttaaagcaagaagctttagatgaagtatttgaagaaatgtatgataaagatgataagcta
tttttaaagctagtggaatgctattgtaacaataaaaatgatagtcaactttttgatatg
gtattaaatctttacaactttgctatgagtagtcctagtccaatagagtggcttaaagaa
aaagctgatgtatttaatgtaagtgacagcttttcctttcaagattcaaagctaggtcaa
gcgctacttaaagatgtgagaatagaattagagagtattgtaagttctatgaatattgct
agggaaatagttaataatactccttcattgttaagttatcaggaaaatataagtccagag
tatgaaatgattagaagattatatgaaagctcaaattcctttgaggatttaaagtgtagc
tttgaaaatgtatcttttagcaagcttgctacaataagaggatgtaaagataaagtagag
caggaagaagttaaaaaaataagagataatgctaagaaaaaagtaaatgagctttcaaat
accataattcaagcttcttcaaagaagagtatagaggatttaaaatatttatatcctctt
atggataaactttcagagcttgtgattaaaatgaaagaagtctatgataaaaagaaaaaa
gaaagggcattaatagattttaatgattttgaacattttgccttagagattctaacagaa
aagaatgatgaaggaaaaataattccttctaaagttgcagaagagttaagagagaagtat
gaagaaatcttaatagatgaatatcaggattctaactatgttcaagaatatattctaact
atgatttcaagaaatcctctaggagaaaataatatatttatggtaggggatgttaaacag
agtatttataggttcagaatggctaagccggagctatttcttcataaaaaaaatacttat
agtgaagaagaagatgcagatgaaataataataaaactatataaaaattttagaagcaga
gaagaagttataaatgctactaattttatatttaaacatataatgtcaaacaatgtagga
gagcttgaatatacagaggaagaggctctaaatttaggagcggattataagcctttagaa
gatgatggtatagtaggtggacctgtagaaataatgctttttgaaaaaaataaagatgtt
gaagaaattgaagaagaggacagtgaaccattaaccaatattcaaatagaagctagagca
gtaggaaacagaatcaaggagcttactaatatagaaagtggttttaaagtttttgataaa
aacactaaaaattatagaaatgtagagtataaagatatagtaatattgcttcgcgctaca
tctgagtacgcaccagtatttagtgaggaacttaaaaatttaggtattcctgtatatgca
gatacttcagaaggatattttaatacattagaaattcaaattatgataagtcttcttcaa
attatagataatccaagacaagacgttccattattagcagtgcttcgttctccaataggt
ggattttcagcagaaaacctagtagatataagaataaatagtcctgaaactacagtttat
gaagctatgagtagttatctaaatgatgaagaaaacttagagcttaagaaaaaagttgaa
aaatttttagaaaagctagttcattggagaaatagatctttaataactcctattgatgag
ttcatttggtatttatatatggatacaggatattatgggtatgtaggtgccatgccagca
ggaattcaaagacaagcaaatttaaggattttatttcaaagggcaagacaatatgagaat
acaagctacaagggattatttaattttgttaattttattaataagttaaaagtaagtagt
ggcgatttaggaactgctaaaaccataggagaaaatgaaaatgtagttagaattatgagt
attcacaaaagtaagggactagagtttcctgttgtatttttgagtgccatgggtaaaaac
tttaatcgtatggatagtagaaaaaaagtgttatttcatcatgatttaggctttggacct
gaacttgttgatatagaaaaaagaatatcttattcccctaccgtaaaggaaatattgaaa
agcaaaatcaatatagaaagtctttctgaggagatgagagttttatacgttgcatttaca
agagctaaggaaaaactaatattaacgggtacttgtagggattttgataagtctatagaa
aattggacttcggtggcaagaaatagtgaagataagattttagaaggatatttattaaaa
gggaatagttatctagattgggttatgccttgtgttataaagcataaagatggtgaacta
ttaagaaattacttaaagatcaacgaggagtcagtgggattagtgcaagataattctaag
tggaatgtaaaacttatgaattataaggatttagatatagaagaggacatagctaagcta
gaggccatagacattaaagaaaagttaaaagaaatagaattaaaagaaattaatattcat
tatagagaagaaatagaaaaaagacttaattttaaatataaatatgaagcttctacaaag
atacctactgtacttacggtatcagaattaaagcgtacgtataatcaaagcttaaatgat
gaatttgttaatacaaattatatacctactattgttagaaagcctatatttctagaagag
aaaagaggattaactcctgcagaaaaaggaattgcaatgcatagtgctatgcagaggtta
gaccttaataatattaattcaaaggaagacataatatctcaaattgaaaatatggttata
aaagaaatgattacagaagagcaagctaagtctattagagtagaaaagatattgaatttt
tttaataccagcttaggtgaaagagttttaatagcacataacaaaactaaagtttataga
gaaactccttttagtattgaaataagtagtacagaaatagatgagagcttagataaaaaa
gtttatgaaaaagaaaatataatagttcaaggtataatagatggatactttgaagaagat
ggagaaatagtgttatttgattacaaaacagattatgtacgtaatggggatactgcttca
atagtagaaaaatataaatctcaaattgattattatgcgagggcattagaaaagatatta
ggaaaaaaagttaaagaaagatatctttacttattttctattgatagtgaagtaatactt
taa
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