Clostridium argentinense: RSJ17_06045
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Entry
RSJ17_06045 CDS
T05123
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
carg
Clostridium argentinense
Pathway
carg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ17_06045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carg03019
]
RSJ17_06045
03009 Ribosome biogenesis [BR:
carg03009
]
RSJ17_06045
Enzymes [BR:
carg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSJ17_06045
Messenger RNA biogenesis [BR:
carg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSJ17_06045
Ribosome biogenesis [BR:
carg03009
]
Prokaryotic type
rRNA helicases
RSJ17_06045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Phytoreo_P8
Helicase_RecD
AAA_30
DsrH
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARC84128
LinkDB
All DBs
Position
complement(1186457..1188025)
Genome browser
AA seq
522 aa
AA seq
DB search
MNKIKFDDLGLEPSVLRAINDLKFEVPSEIQAKSIPVSLEGYDLIGQAQTGTGKTLAFGA
PLLSLMAPSNGKVQAIILAPTRELAIQVSEELSRINKYEKYKILPIYGGQSVEKQLTPLR
KGVDIVVGTPGRVLYHINRRTLKLEDAKFLVLDEADEMLNMGFIEDIEAIISNLKEDRQT
LLFSATMPKQIKNLAKNYMKPDAKHVAIAKKSLTVSKIEQYYFEVNPKNKFEVLCRILDV
DAPKSAILFCKTKRGVDELVDALQGKGYIVEGMHGDMKQTQRLNTLKKFKTGHLNYLIAT
DVAARGIDIEDITHVINYDLPQDSESYIHRIGRTGRANKEGTAYSFATRKEMSMIRQIEN
DTKSKLLRKQVPTLAEIFTSKSEGILDSIRETLEENSYENFIQISKDLINEFGAEDVAAS
LIKILFDRELNFEYTDDTMKNDEMSRLFFSVGRLDSVSTRDLVKFLDDTAEVKSKELGRI
DILDKFTFVDVPSNLVDNIIERSSGKKINQRKVRIELSTRRK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaataaaatttgacgatttaggtcttgaaccttctgtactacgtgcaataaat
gacttaaaatttgaagttccttcagaaatacaagctaaaagtatccctgttagcttagaa
ggatatgatttgataggtcaggctcagacaggaacaggtaagacgttagctttcggagct
ccacttttaagcttaatggctccttcaaatggaaaggttcaagctataatattagcacca
acaagagaacttgcaatacaagttagtgaagaattatcccgtataaataaatatgaaaaa
tataaaatacttcctatatatggaggtcaatccgttgaaaaacaattaactccattaaga
aaaggcgtagatatagtagttggaactcctggaagagttttataccatattaatagaaga
actttaaagctagaagatgctaagttcttagttttagatgaagcagatgaaatgttaaat
atgggatttatagaagatattgaagctataataagtaatttaaaagaagataggcaaact
ttactattctctgctacaatgccaaaacaaataaagaatttagctaaaaattatatgaag
cctgatgcaaaacatgttgctatagctaaaaaatctttaacagtttctaaaattgaacaa
tactattttgaagttaatccaaagaataaatttgaagttctatgcagaatattggacgta
gatgcacctaaaagtgctatattattctgtaagactaaaagaggtgtagatgagttagta
gacgctctacaaggtaagggatacattgtagaaggaatgcatggtgatatgaagcaaact
caaagattaaatacccttaaaaaattcaaaactggacatttaaattatttaattgcaaca
gacgtggctgcacgtggtattgatattgaagatataactcatgttatcaattatgatctt
ccacaagatagtgaatcatatattcacagaataggaagaacaggaagggcaaataaagag
ggtactgcttatagctttgccactcgtaaggaaatgtctatgataagacaaatagaaaat
gatactaaaagtaaacttttaagaaaacaagtacctaccttagctgaaatatttacttca
aaatctgaaggaatactggactctataagagaaactttagaagaaaattcctatgaaaac
tttattcaaatatctaaagatcttataaatgaatttggtgcagaagatgttgctgcatcc
ttaattaaaatattatttgatagagaactaaattttgaatacacagacgatactatgaaa
aatgatgagatgtctagattattcttctctgttggaagattagatagtgtatccactaga
gatttagttaaattcttagacgatactgctgaagttaaatctaaagaattaggtcgtata
gacatattagataagtttacatttgtagatgtaccaagcaatttagtagataatataatt
gagagaagctctggtaaaaaaattaatcaaagaaaagttagaatagaattatctactaga
agaaaataa
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