KEGG   Clostridium argentinense: RSJ17_12650
Entry
RSJ17_12650       CDS       T05123                                 
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
  KO
K02405  RNA polymerase sigma factor FliA
Organism
carg  Clostridium argentinense
Pathway
carg02020  Two-component system
carg02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:carg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    RSJ17_12650
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    RSJ17_12650
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:carg03021]
    RSJ17_12650
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:carg02035]
    RSJ17_12650
Transcription machinery [BR:carg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     RSJ17_12650
Bacterial motility proteins [BR:carg02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    RSJ17_12650
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r3 Sigma70_r4_2 HTH_23 Sigma70_ECF GerE TnsD UPF0122 HTH_3 MarR Phage_terminase DUF4276 HTH_38 HTH_Tnp_4
Other DBs
NCBI-ProteinID: ARC85287
LinkDB
Position
complement(2647812..2648546)
AA seq 244 aa
MDVNSAVEAKGEVVKKYIPLVKYIASRIIMGKTKYVEYEDLVSYGMVGLMDALNKFDESK
GMKFSTYAAIRIKGAMIDELRKNSPISKGSMDKLNKYNDAIEKLQNKLFREPNNYEIAEE
LGISIQEVTQVENYINYISVVSLETLMFSEEDEISLIGTIEDKKSPSPEKSLEEKEILEY
LAKALDLLREKDKLVITLYYYEGLTLKEIGKILNVSESRVCQLHSKALINLRKILKKLKY
DINS
NT seq 735 nt   +upstreamnt  +downstreamnt
atggacgtgaatagtgctgtagaagcaaagggggaagttgtaaaaaagtatataccacta
gtaaaatatattgcttctagaattatcatgggaaaaactaagtatgtagaatatgaggat
ttagtcagctatggtatggtaggccttatggacgccttaaacaaatttgacgagagcaaa
ggtatgaaattttcaacttatgcagcgataaggattaaaggggctatgatagatgaactt
agaaaaaatagccctatttctaaaggttccatggacaagcttaataagtataatgatgct
attgaaaaattgcaaaataaattgtttagagaacctaataactatgagatagcagaagaa
ttaggaatatctattcaagaagttactcaagttgaaaactacattaattatatctcagta
gtgtctttagaaaccttaatgttcagtgaagaagatgagatttcattaataggaactatc
gaagataaaaaaagtccaagtccagaaaaatctttagaagaaaaagagatattggaatat
ttagctaaagccttagatttattaagagagaaagataaattagtaattacactttattat
tatgaagggcttaccttaaaggaaataggaaaaattttaaatgtttcagaatcaagagta
tgtcaacttcatagtaaggcactaataaatttaagaaagatattaaaaaaacttaagtac
gatattaattcttaa

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