Clostridium argentinense: RSJ17_14340
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Entry
RSJ17_14340 CDS
T05123
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
carg
Clostridium argentinense
Pathway
carg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ17_14340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carg03019
]
RSJ17_14340
03016 Transfer RNA biogenesis [BR:
carg03016
]
RSJ17_14340
Enzymes [BR:
carg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RSJ17_14340
Messenger RNA biogenesis [BR:
carg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSJ17_14340
Transfer RNA biogenesis [BR:
carg03016
]
Prokaryotic type
tRNA degradation factors
RSJ17_14340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
HEPN_RiboL-PSP
MUG2_C
KH_2
PCB_OB
DUF5441
DUF6918
S1_RRP5
AAA_15
Motif
Other DBs
NCBI-ProteinID:
ARC85599
LinkDB
All DBs
Position
complement(3018808..3020916)
Genome browser
AA seq
702 aa
AA seq
DB search
MINTLETTVAGRTMKVEYGKVGMLSNCALFMNYGDTVVLVNVNASETPRDGIDFFPLSVE
YEERLYAVGKIPGGFIKREGKPSEKAVLNGRAIDRPIRPLFPKGYRNDVQVVCTVVSVEQ
DNLPEILAMNAASMALCLSSIPFTDAVGTVSVGLVDGQFVINPTVAQREKSTLSLTVCAT
KERIMMIEAGGDEIPEETMIEAINFGFEECKKIVAFQEEAMAKFGKEKITPEIHKTDENV
EEDIRNFAYDMLKDAMYTTDKDERNNKVSEIKEKISEAFGEKYEDKMSDVSETIYNLQKE
IVRHMLLRDKRRPDGRGFDEIRKISCETGLLPRTHGTGLFTRGLTQVMTVATLGALGDVQ
IIDGLGEEEFKRYMHHYNFPAYSVGEVKPLRGPGRREIGHGALAERALEPLIPSIEEFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSEDLSEEEVLTDI
QGIEDFFGDMDFKVAGTEKGITSIQVDTKIKGLSGYCIRTAIEDAKKARLHILDKIKECI
PEVRQELSPYAPRLYAINVNPDKIRDIIGPGGKTIKKIIAETGVKIDTNDDGKVVIMSND
SVGANMALKMIKELTKEVEVGEIYLGKVTKIATFGAFVELLPGKEGLVHISKLDTARVNK
VEDIVSVGDEILVKVTEIDNQGRVNLSRKDAIKETEEEKIDN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgattaatacattagaaactactgtagcaggaagaaccatgaaagttgaatatggtaaa
gttggaatgctttcaaactgtgcactatttatgaactatggagatacagtagtacttgtt
aatgtaaacgcttcagaaacaccaagggatgggatagattttttccctctaagtgttgaa
tatgaagaaagattatatgcagtaggaaagattccaggagggtttatcaaaagagaaggt
aagccatctgagaaagcagtattaaatggaagagctatagatagacctataagacctcta
tttccaaaaggatatagaaatgatgttcaagtagtttgtacagtagtgtctgttgagcaa
gataaccttccagaaatattggctatgaatgctgcatcaatggcattatgtttatctagc
ataccatttactgatgctgtaggaacagtatctgttggtcttgtagatggacagtttgtt
ataaacccaacagtagctcaaagagaaaaaagtacattatcattaactgtctgtgcaact
aaagaaagaattatgatgatagaagctggtggagatgaaattccagaagaaacaatgata
gaagctataaactttggatttgaagagtgtaaaaaaatagttgcattccaagaagaggct
atggcgaagtttggaaaagaaaaaataactccagagatacacaaaactgatgaaaatgta
gaagaagacataagaaattttgcatatgatatgttaaaagatgcaatgtatactactgac
aaagatgaaagaaataacaaagtttcagaaattaaagagaaaatcagcgaagcctttgga
gaaaaatatgaggataaaatgtctgatgtgtcagaaactatttataatcttcaaaaagaa
atagttagacatatgcttcttcgtgacaagagaagaccagacggcagaggttttgatgaa
ataagaaaaattagctgtgaaacaggattacttccaagaacacatggtacaggattattt
acaagaggattaactcaggtaatgactgttgctactctaggtgcacttggagatgttcaa
ataattgatggtcttggcgaagaagaatttaaaagatatatgcatcattataatttccca
gcttatagtgtaggagaagttaaaccacttcgtggaccaggaagaagagaaataggacat
ggtgctttagcagaaagagcattagaaccattaattccttcaattgaagagttcccatat
actataagattagtatctgaggtattaagttcaaatggatctacatctcaagcaagtgtg
tgcggtagtacattagcattattagatgcaggagttcctataaaaagaccagcagcaggt
atagctatgggattaataactagtgaggatttatcagaagaagaggtattaacagatatt
caaggtattgaagatttctttggagatatggactttaaggttgcaggaactgaaaaaggt
ataacttctatacaagtagatacaaaaataaaaggattatctggctattgtataagaact
gctatagaagatgctaaaaaagctagattgcacattttagacaaaataaaagaatgtata
ccagaagtaagacaagaattatcaccatatgcaccaagattatatgcaataaacgttaat
ccggataaaattagagacatcataggaccaggtggaaaaactataaagaaaattatagct
gaaactggtgttaagatagatactaatgatgatggtaaggttgttattatgtctaacgac
agtgttggagcaaatatggctttaaaaatgataaaagaacttactaaagaagttgaagta
ggagaaatctatcttggtaaagtaactaaaattgctacttttggagcctttgtagaatta
ttacctggaaaagaaggtttagttcatatatctaaactagatactgcaagagtaaataag
gtagaagatattgtttctgtaggagatgagatattagttaaagtaacagagatagataat
caaggaagagttaatctttcaagaaaagatgctattaaggaaacagaagaagaaaaaatt
gataattaa
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