Clostridium argentinense: RSJ17_14395
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Entry
RSJ17_14395 CDS
T05123
Symbol
polC
Name
(GenBank) DNA polymerase III subunit alpha
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
carg
Clostridium argentinense
Pathway
carg03030
DNA replication
carg03430
Mismatch repair
carg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSJ17_14395 (polC)
03430 Mismatch repair
RSJ17_14395 (polC)
03440 Homologous recombination
RSJ17_14395 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
carg03032
]
RSJ17_14395 (polC)
03400 DNA repair and recombination proteins [BR:
carg03400
]
RSJ17_14395 (polC)
Enzymes [BR:
carg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RSJ17_14395 (polC)
DNA replication proteins [BR:
carg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RSJ17_14395 (polC)
DNA repair and recombination proteins [BR:
carg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RSJ17_14395 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
Rv2179c-like
tRNA_anti-codon
RNase_H_2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ARC85609
LinkDB
All DBs
Position
complement(3029368..3033696)
Genome browser
AA seq
1442 aa
AA seq
DB search
MNLSLVDILKNHLNEDEEICQYDIKVLRVQYLKKSGKLRIHIKGNSNVKEENKPRVEKLL
KNILPSFNDLEFIWYIDIKSANLEEICSMYWTDVVAAVTSKSPALKTVLLNCKKTVEDDT
LNIFISNRFICELLCNKNMEHNLRTTLKEVYGINASIKVQYDTDKKFDYFKEKEKENINI
IQEVMKDKPMAVSKEISKPKPSSNSNQGGYKKTKFESAKTDIKDENVIVGRHVNGEITPI
EELDQTSGFVSVCGDVFKVEIIETKTGRIIPTFYVTDYTSSITIKCFLKNQELERLQENL
KVGLYCKVSGEVIYDTYAREIVIMGKHIVKMHKIERNDTSEEKRIELHAHTTMSAMDGIT
SASKLIETAAKWGHSAIAITDHGVAQAFPEAMDAAKKNNIKVIYGMEGYLVDDGVPIVLN
GEGKTLDDSFVVFDIETTGFSSENDSIIEIGAVKIEDGKIIDRFNEFVNPNRAIPYEITE
LTGINNDMVKDAEDIASILPRFMDFIGDSIVAAHNASFDTSFIMKNCKRLGLEFKNPIMD
TIPLAKFLFPDLKRYKLNVICKHIGISLENHHRAVDDAKATADIVLHCFNMLRERNILDI
NSLNSEFLGSFDIKKAMTYHIIILAKTQEGLKNLYKLISYSNLEHFYRRPRVPKSLIEKY
REGLIIGSACEAGQIYREVLQGKSIEEMENIVKLYDYLEIQPIDNNRFLIQNGNVKNEEE
LRSINKKICDLGEKYNKPVVATGDVHFLNPTDEVFRRILMAGQGFSDADNQPPLYLKTTN
EMLKEFSYLGEEKAREVVIVNPNKISDEVQTVKPIPDETYPPKIEGAEDDIRNMTMKKVH
SIYGENLPEVIQKRLDKELNSIINNGYAVLYLIAHKLVAKSIADGYLVGSRGSVGSSFVA
TMTDITEVNGLPPHYICPNCKHSEFFMDGSVASGVDLPDKNCEKCGTVYNKDGHDIPFET
FLGFEGDKEPDIDLNFSGDNQGDIHRYTEVLFGEGYTFKAGTIGTIAEKTAYGFVKKYLD
GKGKYATSAEIERLTLGCTGVKRTTGQHPGGIMVVPNDNEIFNFCPIQRPADDSTSDIIT
THFDYHSISGRLLKLDILGHDDPTVLRMLQDITGLDPKTIPLSDPKVISIFTSTEALGLT
KEELGCEVGSYGIPEFGTKFVRQMLIDTQPKTFSDLVRISGLSHGTDVWLNNAQYYIKEG
YTTLKDCISTRDDIMVYLIYKGLPPKTAFTIMEKVRKGKGLSEEHEQIMREHDVPDWYIG
SCKKIKYMFPKGHAAAYVMMAVRIAYYKVYYPKAYYATYFTVRADDFDGDIVIKGEEAIK
AKMDEINALGNNVGPKEKGLLTILELSYEMYKRGIKFLPVDIYKSDATKFTIEGELVRIP
ISGLQGVGQNAAKSIMEARADGEFISKEDLRIRSKVSKTVIEALDNHGALEGLPETNQLC
LF
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaagcctagttgatattttaaaaaatcatttaaatgaagatgaagagatatgt
caatatgatattaaggtactgagagttcagtaccttaaaaaaagcggaaaattgagaata
cacattaaaggcaatagcaacgtaaaagaagaaaataaaccaagagtggaaaaacttcta
aaaaacattttaccttcctttaatgacttagaatttatatggtatatagatataaaatct
gctaatcttgaagagatttgttctatgtattggactgatgttgttgctgctgtgacctca
aaaagtccagctctaaaaacagtacttttgaattgcaaaaaaacagtggaagatgatact
ttaaatatatttatttcaaatagatttatttgtgagttgctatgtaataaaaatatggaa
cataatcttaggactactcttaaagaagtatacggaataaatgctagtattaaagttcaa
tatgatactgataaaaagtttgattattttaaagaaaaagaaaaagaaaatattaacata
attcaagaagttatgaaagataaaccgatggcagtatctaaggaaatttcaaagcctaag
ccatcatcaaactcaaatcaaggaggatataaaaaaactaaatttgagagtgctaaaaca
gatattaaagacgaaaatgtcattgttggcagacatgtaaatggagagataactcctatc
gaagaactagatcaaacttcaggttttgtttctgtctgcggagatgtatttaaggtagaa
attattgaaaccaaaaccggaaggataattcctactttttatgtaacagattatacaagt
tctataactataaaatgttttttaaagaatcaagaacttgaaagattacaggaaaattta
aaggtaggactttattgtaaggtcagtggtgaagttatatatgatacctatgctagagag
atagtgataatgggtaagcatatagttaagatgcataaaattgaaaggaatgacactagc
gaagaaaaaagaatagaattgcatgctcatactactatgagtgccatggatggaataact
tctgcttcaaaattaatcgaaactgcagctaaatggggccatagtgctattgctataaca
gatcatggagtagcacaagctttcccagaagctatggacgctgcaaaaaagaataatata
aaagttatatatggaatggaaggctatttagtagatgatggggttccaattgttttgaac
ggagaagggaaaacactagatgatagttttgtggtattcgatatagaaactacaggattt
tctagtgaaaatgatagcattatagaaattggggctgtaaagatagaagatggaaaaatt
atagatagatttaatgagttcgtaaatcctaatagagctatcccttatgaaataacagaa
ctcacaggtattaataatgacatggtcaaagatgctgaggatatagcctccatacttcct
aggtttatggattttataggtgatagtatagtagctgcacataatgcttcttttgataca
tcatttataatgaaaaattgtaagagattaggattagaatttaaaaacccaataatggac
acaataccattagcaaaatttttatttccagatctaaaaagatataagctaaacgtgata
tgtaagcatataggtatatctttagaaaatcatcacagggcagtagacgatgctaaggca
actgcagatatagttttacattgctttaatatgcttagagaaagaaatatattagatatt
aattctttaaatagcgaatttttaggaagttttgatataaaaaaagcaatgacatatcat
ataattatattagcaaaaactcaagaaggacttaaaaatttatataagcttatatcctat
tctaatttagaacatttttatagaagaccaagagtacctaaaagccttattgaaaaatat
agagaagggcttattataggttctgcctgtgaagcaggtcaaatatatagagaagtactt
caaggaaaatctatagaggaaatggagaatatagtaaagctttatgattatttagaaatt
caacctatagacaataatagatttttaatacaaaatggaaatgttaaaaatgaagaagaa
cttaggagtataaacaagaaaatttgtgatttaggagaaaaatataataaacctgtggta
gctacaggagatgttcattttctaaatcctacagatgaggtatttagaagaatattaatg
gcaggtcaaggattttccgatgcggataatcaacctcccttgtatttaaaaactactaat
gagatgcttaaggaattttcctatttaggagaagaaaaagcacgagaggttgtaatagta
aatcctaataaaatatccgatgaagttcaaactgtaaaacctataccagatgaaacctat
cctcctaaaatagaaggtgcagaagatgatataagaaatatgactatgaaaaaagttcat
tctatatatggagaaaatttaccagaagttattcaaaaaaggttagataaagaacttaat
tctataataaataatgggtatgcagtgctttacttaattgcccataagcttgttgctaag
tctatagctgatggatatttggttggttctagaggatctgttgggtcttcatttgttgca
actatgacagatataacagaagtaaatggccttccaccacattatatatgccctaattgt
aaacatagtgaattttttatggatggatctgtagcttcaggcgtagaccttccagataaa
aattgtgaaaaatgtggtactgtctacaacaaagatgggcatgatataccatttgaaacc
ttcttaggatttgaaggggataaagaaccagatatagaccttaacttttctggagataac
caaggtgatattcatagatatacagaagttctttttggtgaaggatatacatttaaggca
ggtactataggtactattgcagaaaaaactgcctatggatttgttaagaaatatttagat
ggaaaaggaaagtatgcaacatcagctgaaattgaaaggttgacattaggatgtacagga
gttaaaagaactacaggacagcatccaggaggtataatggttgtacctaatgataatgaa
atatttaatttctgtccaatccagcgcccagcagatgattctacatcggatataataacc
actcactttgattatcactctataagtggtaggttattaaaattagatatacttggtcac
gacgatcctacagtgcttagaatgttgcaggatataactggacttgatcctaaaactata
ccactttcagatcctaaagttataagtatatttacttctacagaggctttagggctaact
aaagaagaactgggatgtgaggtaggtagctatgggataccggaatttggtacaaagttt
gttaggcaaatgcttatagatacgcagcctaagacattttctgacctagtgagaatttca
ggactttctcacggtacagatgtatggcttaataatgctcaatactatatcaaagaagga
tatacaacacttaaagattgtatatctacaagagatgatattatggtatacctaatatac
aaaggacttcctcctaaaactgcatttactataatggaaaaggttagaaagggtaaagga
ctttcagaggagcatgaacagataatgagagaacatgatgtaccggattggtatatagga
tcttgtaaaaaaattaagtacatgtttcctaaaggccacgctgccgcttatgttatgatg
gcagttagaatagcttattataaagtgtattatcctaaagcttattacgcaacctacttc
actgtaagagcagacgattttgatggagacatagtaattaaaggggaagaagctataaaa
gctaaaatggatgaaataaacgctttgggaaacaatgtaggacctaaagaaaaagggcta
ctcaccatattagaattatcttacgaaatgtataaaagaggtataaaattcttaccagtg
gatatatataaatctgatgctactaaatttaccatagagggagaactggttagaattcct
attagtggacttcaaggtgttgggcagaatgcagctaagagtattatggaagctagagct
gatggagagtttatctccaaagaagatttacgaattagaagtaaagtttctaaaacagta
attgaagccttagataatcatggtgctttggaaggcttaccagaaactaatcaattatgc
ttattttaa
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