Clostridium argentinense: RSJ17_16075
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Entry
RSJ17_16075 CDS
T05123
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
carg
Clostridium argentinense
Pathway
carg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ17_16075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carg03019
]
RSJ17_16075
03009 Ribosome biogenesis [BR:
carg03009
]
RSJ17_16075
Enzymes [BR:
carg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
RSJ17_16075
Messenger RNA biogenesis [BR:
carg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
RSJ17_16075
Ribosome biogenesis [BR:
carg03009
]
Prokaryotic type
rRNA helicases
RSJ17_16075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ARC85903
LinkDB
All DBs
Position
3361723..3362832
Genome browser
AA seq
369 aa
AA seq
DB search
MSFKNLGISEDIITVLKNSGITRPTAIQEESITFIKEGRDVIAEAQTGTGKTLAFLLPIF
ENISPNIDAVQALIVSPTRELAIQITEEAMKLKAAKDINILAAYGGKDIGAQLKKLKGNI
HLIIATPGRLLDHLQRKTVDLSKLKTLVLDEADQMLFMGFKNEVEAIIKETPKKRQTLCF
SATMDSQVKKLAYRYMNDPLMVTIKKEAVTLNNIKQFVVETTDRKKQDALCAVLEEDNPF
MAIIFCRTKRRADDLEIALHRRGFKCEKLHGDLIQSKRERIMKSFRNADIQYLIATDVAA
RGLDVSGVTHIYNYDIPENAEGYIHRIGRTGRAGEEGYTCLFIDPKNQKTLEEIERAIKF
KIPRREINI
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaaaaatttaggaattagtgaagatataataactgtattaaaaaattcaggt
attactaggccaacggcaattcaagaagaaagcattacatttattaaagaaggtagagat
gttatagcagaagcgcaaactggtacagggaaaacccttgcttttttacttcctatcttt
gaaaatatatcacctaatatagatgcagttcaagcattgattgtgtctcctacaagagaa
ttagctattcaaataactgaggaagctatgaagcttaaagctgctaaagatataaatatt
ttagcagcatatggtggaaaggatataggagcacaacttaagaaactaaaaggaaatatc
catctgatcattgcaactcctggtagacttttagaccatcttcaaagaaaaacagtagat
cttagcaaattaaaaactttggtattagatgaagcagatcagatgctatttatgggattc
aaaaatgaagttgaagctattataaaagaaacccctaaaaaacgtcaaaccctttgtttt
tctgcaactatggattctcaagttaaaaaattggcctataggtatatgaatgatccttta
atggttactataaaaaaagaagcagttacacttaataacattaaacagtttgtggtggaa
accacagatagaaaaaaacaagatgcactatgtgcagttttagaagaagataatccattt
atggctatcatattttgcagaactaaaagaagggctgatgatcttgaaatagcacttcat
agacgtggatttaaatgtgaaaagttacatggcgatttaattcaatcaaaacgtgaaaga
ataatgaaatcttttagaaatgcagatattcagtacttaatagctacagatgttgcagct
agaggattagatgtgagtggagttactcatatatataattatgatatcccagaaaatgct
gaaggttatatacaccgtattggtagaactggaagagctggtgaagaaggatatacttgt
ctatttatagatccaaaaaatcaaaaaaccttagaggaaatagaaagagcaataaaattt
aagatacctagaagagaaataaacatataa
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