Clostridium argentinense: RSJ17_21245
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Entry
RSJ17_21245 CDS
T05123
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
carg
Clostridium argentinense
Pathway
carg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RSJ17_21245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carg03021
]
RSJ17_21245
03019 Messenger RNA biogenesis [BR:
carg03019
]
RSJ17_21245
Transcription machinery [BR:
carg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RSJ17_21245
Messenger RNA biogenesis [BR:
carg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RSJ17_21245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ARC86832
LinkDB
All DBs
Position
complement(4560531..4561994)
Genome browser
AA seq
487 aa
AA seq
DB search
MSKDLDEMNLSELKELAKGLGIKNISKFKKAELIQEIKKVSPVSIEKSGIVLRERISPKE
NKVEQEVVEPEYSKMEVVNKELQREEDSTDFEEERTETVQEKKERLRELINESDTAKGVL
EISDNGNFGLLRSNNYLSGPDDIYVSLSQIRRFNLKTGDEVEGKVRIPKEGEKYKALLFV
QNINGENPEKASRRTSFEKLIPIYPTERIKLETDSNDLSSRLMDIISPIGKGQRGVIVAP
PKAGKTTLLKKIAQSISTNHPETKLIVLLIDERPEEVTDMQRCIHGDVIYSTFDEEPEHH
AKVAYMVLERAKRMVEQGQDVVILLDSLTRLARAYNLTITRTGRTLSGGLDTGALLMPKK
FFGAARNVEEGGSLTILATALVETGSRMDDMIFEEFKGTGNMEVHLDRILQERRIFPAID
IYKSGTRREDLLLNKSELEITYSIRKLMYNEGNSQAVTEKLINLLSKTKSNKDFFDILSK
NTDLLKQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggacttagatgaaatgaatcttagtgagcttaaggaacttgcaaagggcttg
ggtataaaaaatatttctaagtttaaaaaagctgagcttatacaagaaataaaaaaagta
tcgccggtatcaatagaaaagtcagggattgttttaagagagagaattagtcctaaagaa
aataaagttgaacaagaagtagtagaacctgaatatagtaaaatggaagtagttaataaa
gaacttcaaagagaagaagattctacagattttgaagaagaaagaactgaaacagttcaa
gagaaaaaagagagactcagagagttaataaatgagtcagacacagcaaaaggtgtatta
gagataagtgataatgggaattttggattattaagatccaacaattatttaagcggacca
gatgatatatatgtatcactatcacaaattagaaggttcaacttaaaaactggagatgaa
gtagaaggaaaagtcagaataccaaaagaaggcgaaaagtataaagcgttattatttgtt
caaaatattaatggggaaaatccagaaaaagcttctagaagaacatcttttgaaaagctt
attccaatatatccaacggaaagaatcaaacttgaaaccgattctaatgatttatcttcc
agacttatggatatcatatcgccaatcggaaaagggcaaagaggagttatagttgctcca
cctaaagcaggtaaaacgactcttttaaagaaaattgctcaaagcatatccacaaatcac
ccagaaaccaaattaatagttttactgatagatgaaagaccagaagaagttacagacatg
caaagatgtattcatggagatgttatttactcaacttttgatgaagaaccagagcatcat
gctaaagtagcatatatggtacttgaaagagcaaaaaggatggttgaacaggggcaggat
gttgtaatattattagatagtttaacaagacttgcaagagcatacaaccttacaataaca
agaacaggaagaaccttatctggtggattagatactggggctcttttaatgccgaaaaaa
ttctttggtgcagctagaaatgttgaagaaggtggaagtttaactatacttgcaacggca
ttagtggaaactggaagtagaatggatgatatgatttttgaagaatttaaaggtacagga
aatatggaagttcatttagatagaattcttcaagaaagaaggatatttcctgctatagat
atatataagtcaggaactcgtagagaagatttattattaaataaatcagaattagagatt
acatatagtattagaaagcttatgtataatgaaggtaattctcaagcggtaactgaaaag
cttataaaccttctatcaaaaactaagagcaataaagatttttttgatattttaagtaaa
aatacagatttattaaaacaataa
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