Chryseobacterium arthrosphaerae: EGY05_05655
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Entry
EGY05_05655 CDS
T05746
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
carh
Chryseobacterium arthrosphaerae
Pathway
carh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EGY05_05655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carh03019
]
EGY05_05655
Enzymes [BR:
carh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EGY05_05655
Messenger RNA biogenesis [BR:
carh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EGY05_05655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
TssR_M
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AYZ11440
UniProt:
A0ABU7QZW5
LinkDB
All DBs
Position
1236323..1237675
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AA seq
450 aa
AA seq
DB search
MEKLTFADFDLPVKILDVLADLELFEPTPIQEKSLKPILSGRDVMGIAQTGTGKTLAYLL
PVLKTWKYSKTGNPTVLVLVPTRELVVQVTEILEKLTENITARVIGIYGGKNINTQKLLF
NDGCDILVGTPGRVMDLSIDNAISLKEVQKLIIDEFDEMLNLGFRPQLTHIFEMMKEKRQ
NILFSATMTEAVDEMLDEYFASPVEISLAKSGTPLEKIEQTAYKVENFNTKINLLEYLLK
NNADMSKVLIFNNNKKHADLLFTKIDELFPEQFDVIHSNKSQNYRLKAMKSFENEEIRGL
ITTDVMARGLDISNITHVINFETPDIPEQYIHRIGRTGRADKDGKAITFVTKKEEPLILD
IELLMDKELKFNDFPGDVKINPNKIASEKDEVIMKNPAQVKLNEGGGAFHEKKAKNMKEN
WGGPSKRKAPKKFGANRAQQKAISKSKKKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaactcacttttgcggattttgaccttccggttaaaattcttgatgttttagcg
gatctggaattatttgagcctactcccattcaggagaagagtctgaaacctatcctttcc
ggtagggatgtaatgggaattgcacagaccggaaccgggaaaacattagcttaccttctg
cccgttctgaaaacatggaaatacagtaaaacaggaaatccaactgttttggtgcttgtt
cctacaagggaattggtagttcaggtaacggaaatccttgagaagcttacagaaaacatc
accgcaagagttatcggtatatatggtggtaaaaatatcaatactcaaaaactgttattc
aatgacggatgtgatatattggtaggaactccgggaagagtgatggacctttccatagac
aatgccatctctctgaaagaagttcagaaactgatcattgatgaatttgatgaaatgctg
aacctgggtttcaggccacagctgactcacatttttgaaatgatgaaagagaaaagacag
aatattctgttttctgcaacgatgacggaagctgtagatgaaatgctggacgaatatttt
gcaagcccggtagaaatttcattggcaaaatccggaacaccgcttgagaaaattgaacag
actgcttataaagttgaaaacttcaatacgaagatcaatttattggaatacctgttgaag
aacaatgcggatatgtctaaggtgttgatcttcaataacaataaaaaacatgccgatctt
ctttttaccaaaattgatgaacttttccctgaacagttcgatgtgatccactccaataaa
tcacagaattacaggttgaaggctatgaaaagctttgaaaatgaagagatcagaggtctg
attactacagacgtaatggcgagaggacttgatatctccaatattactcacgtgatcaac
tttgaaactcctgatattcctgagcagtatattcacagaatcggtagaacgggtagagca
gataaagatggaaaagccattacttttgtgaccaaaaaggaagaacctttaatccttgac
attgaattgctgatggataaggaattaaagttcaatgatttccctggagatgttaaaatt
aacccgaacaagattgcttctgaaaaagatgaagtgatcatgaaaaaccctgcacaggta
aaactgaatgaaggtggaggcgctttccatgagaaaaaagctaaaaacatgaaagaaaac
tggggcgggccttccaaaagaaaggcacctaaaaagttcggagctaacagggcacagcaa
aaagcgatttctaaatcgaagaaaaagaaataa
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