Chryseobacterium arthrosphaerae: EGY05_18745
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Entry
EGY05_18745 CDS
T05746
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
carh
Chryseobacterium arthrosphaerae
Pathway
carh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
carh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EGY05_18745 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carh03021
]
EGY05_18745 (rpoC)
03400 DNA repair and recombination proteins [BR:
carh03400
]
EGY05_18745 (rpoC)
Enzymes [BR:
carh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EGY05_18745 (rpoC)
Transcription machinery [BR:
carh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EGY05_18745 (rpoC)
DNA repair and recombination proteins [BR:
carh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EGY05_18745 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AYZ13854
UniProt:
A0A1B8ZUX8
LinkDB
All DBs
Position
complement(4072398..4076663)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFENMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGRVSLNAKVRCRLPIKEDGQIVTRLIETSVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMIAQSIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEDDCGTLRGTEVTALKKNDEIVE
RISERILGRVSLHDIYDPETDELIASADQVIIEELAKKIEEAGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIVAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNDSRTPLMVANVPYGSILSVKP
GDKVKKGDTICRWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPEDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLRREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDDLNGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDLN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacgagtagatttaataaaataaccatcggtttagcttcaccg
gagtctattttacaggactcaagaggagaggttctaaaaccggaaactattaactacaga
actcacaaacctgaaagagacgggctattctgtgagaaaattttcggtcctgtaaaggat
tacgaatgtgcttgtggtaagtacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggagtagaagttactgagaaaaaagtaagaagagagagaatcgggcacatcaacctt
gtagttccaattgcacacatctggtatttccgttcattgccaaacaaaatcggatacctt
cttggaattccttccaagaaattagatatgatcatctactacgaaagatatgtagtgatc
cagcaggggattgccaagaaattagacggttctgatttcgaaaatatggaattccttaca
gaagaagagtaccttgatatcatggagacccttcctgtagaaaaccagtatcttgacgat
tccgatccaaacaaattcatcgctaaaatgggtgctgaagctgttgaggaattattaaaa
agaatcgatcttgatgcattgtctttcgatttaagacacaaagctcacaatgaaggttct
aaacaaagaagaactgaagctcttaaaaggttgaacgttgtagaagcattaagaggtgcc
aatacaagaatgatcaacagaccggagtggatgatcatgcgtgttcttccagttatccca
ccagaactgagaccattggttccgttggatggaggacgtttcgcaacttctgacttaaat
gacctttacagaagagttattatcagaaataaccgtttgaagagattattggagatcaaa
gctccggaagtaatcttgagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataacacaagaaaatcttctgcagtaaaatctgaatcaaacagaccactgaaatca
ctttctgattcattgaaaggtaagcagggtcgtttccgtcagaacctacttgggaaaagg
gttgactactctgcgcgttcggtaattgttgtaggtccaaacttacagcttcacgagtgt
ggtattcctaaagatatggcagctgaactttacaaaccgttcatcatcagaaaactgatt
gaaagaggtattgtaaaaacagtaaaatctgcaaagagaattatcgatagaaaagaacct
gtagtttatgatatccttgaaaacgtgatgaaaggtcacccggtactgttgaacagggca
cctacccttcacagactggggatccaggctttccagcctaagatgatcgaaggtaaggca
atccagctacacccgttagtaactacggcattcaacgccgatttcgacggtgaccagatg
gcggtacacttaccgttaggtcctgaagcgatccttgaagcgcagttattgatgttaggt
tctcagaacatcctgaaccctgcaaacggttctccgattacggtaccttctcaggacatg
gttcttggtctttatttcatgactaaagaattaagttctacagaagatatgaaagtaaaa
ggggaaggtcttgctttctattctcctgaagaagctgaaatcgcttatgcagaaggtaga
gtttcattaaatgccaaggtaagatgtagactgccaatcaaagaagacggacagatcgta
acaagactgatcgaaacttctgtaggtagaatcttattcaaccagattgtacctaagcag
gtaggatatatcaatgaacttcttactaagaaatcattgagaaacgttatcggtaagatc
cttgctgatacggatttccctacaacggtgaaattccttgatgcaatgaaggacttggga
tattcaaacgcattcaaaggaggtctttctttctcacttggggatatcgtagttcctgtt
gagaaaaagcagatgattgcacaatcaatcgaaactgtagacgaaatcagagccaactat
aacatgggtctgattaccgatacagaacgttataaccaggtaatcgacgtttggacaaac
accaacgccggattaactgaaatgatcatgagcagaatgaaaactgaccaaggtggtttc
aattctgtatacatgatgcttgactctggagcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcaaaaagcaggttctaccggagctgag
atcatcgaaaacccgatccttgccaactttaaggaaggtctttcgattctagagtacttt
atctctacccacggtgcccgtaaaggtcttgcggataccgctcttaaaactgccgatgcc
ggttacctgaccagaagattggtagacgttgcacaggacgttatcgttacagaagacgac
tgtggaactttaagaggaacagaagttactgcacttaagaaaaatgacgagatcgttgaa
agaatctctgaaagaatcttaggtagagtatctcttcatgatatttatgatcctgaaact
gacgagttaatagcaagtgcagatcaggtaatcatcgaagaattagcgaagaaaattgaa
gaagcaggcttagaagccgttgaagtacgttctccgttaacctgtgaagctaagaaaggt
atctgtgcgaaatgttacggtagaaacttagcaacaggtaaagtaatccatatgggtgaa
gcggtaggtgtaattgcagcacagtctattggggaaccgggtactcagcttacgttgaga
accttccaccaggggggtactgcaggtaacgtatcagaaaacccatcaatcgttgcaaga
agagacggtatcgtagaaatggacgaagtaagaaccattacttctgaagatgaaaacggt
aatacagctgaagttgtagtttcccgttcaacggaattcagattagttgctgataacgat
tcaagaactccattgatggtagcgaacgtaccttacggatcgatattatctgtaaaacca
ggtgataaagtgaagaaaggagatacgatctgtagatgggatccgtataacgcggttatc
attgcggaaacttcaggtaaggtagaatacgaggatatcatccagggtatttcattccag
cttgaaattgacgaacagacaggatttgaagagaaagtaatctctgaatccagaaataag
aaagccgtacctaccctgaaggtggtagactctaagggagttgagcagaaagcttacaac
ttaccggtaggagcccacttgatggtaaacgatggtgaaaaaatcaaggctggtaaagtc
ctgatcaagatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttaccgaattattcgaagcaagaaacccttcaaacccagcagttgttactgaaattgac
ggggtagtttcttacggaaaaatcaagagaggtaaccgagaattgatcgttgaagctaaa
actggtgaaagaaagatttacttagtgaaattatctaaccagattcttgttcaggagaat
gacttcgtaagagcaggttctccgctttctgacggttctatcacaccggaagatatctta
agaattaaagggccaacagcggttcaggaatacttagtaaacgaaatccaggaagtttac
cgtttacagggggtaaaaatcgacgacaagcacttcgaaatcatcgtaagacagatgatg
acaaaagtatctatcgtggatggaggtgatactcagttccttgaaggagctcttgagcac
aagtatgatttccttgaagagaacaacagagtattcggtcttaaagtagtagtagatgcc
ggtgattcgaaagaattcaaaccaggtcagatgattactgcaagagaattaagagacgaa
aactctaagttgagacgtgaagacttagcattggtagaagtaagagaagctcttcctgct
acagcaactccggtattacaggggattacaagagcggcgcttcaaacgaaatcgttcatg
tctgcagcatcgttccaggaaacaactaaagttcttaacgaagcagcagttgccggtaag
atagatgatctgaacggtcttaaagaaaatgtaattgtaggacacagaattcctgcaggt
acaggtcttaaagagtatcagaatgttatcgtaggttctaagaaagaattcgaagacctt
aactaa
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