Chryseobacterium arthrosphaerae: EGY05_20650
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Entry
EGY05_20650 CDS
T05746
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
carh
Chryseobacterium arthrosphaerae
Brite
KEGG Orthology (KO) [BR:
carh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
carh03016
]
EGY05_20650
Enzymes [BR:
carh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EGY05_20650
Transfer RNA biogenesis [BR:
carh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EGY05_20650
Prokaryotic type
tRNA splicing ligases
EGY05_20650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AYZ14202
LinkDB
All DBs
Position
complement(4519235..4520626)
Genome browser
AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKLGYPNNQSVNVALEVMKRNFATKNIHHVKSLLKEILLNPEDFEKDLT
FGQIAETLLSSKKTEKRMLNSQRTSFQIFGSNISEEAKNQLYTALKLPISTQGALMPDAH
SGYGLPIGGVLAVENAVLPYGVGMDIGCRMSLSILDTPVSYLDGARDKYEKALAEHTKFG
MYETHKSHIDHEIFDRDTFDLIPVLRRLKGKAIKQMGSSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAAEQCPLPKEAQSFAWLDLSTHLGLEYWTA
MNLAGDYASACHDDIHRRLVKAVGGRVKARIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDALNSASHGAGRAHSRGECRSLFTQHDIKKELKLKNV
TLMGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaactaaaaggaaaagatatattaaaactgggctatcccaataaccaa
agcgtaaacgtagcactggaagtcatgaaaagaaattttgcaaccaagaatattcatcac
gtaaaatctcttttaaaggaaattctgctgaatccggaagattttgaaaaagatctcacc
ttcgggcaaattgcagaaaccctgctttcatccaaaaaaacagaaaagagaatgctgaat
tcacagcgtacttcatttcagatttttggaagcaatatttcagaagaagcaaaaaaccag
ctgtacaccgctttgaaattgccaatttccacacagggagcattaatgcctgatgcccat
agcggctacggacttccgatcggaggagtgctcgctgtagaaaatgcggtacttccttac
ggcgtgggaatggatatcggatgcagaatgagcctcagtattttggatacaccagtttca
tatcttgacggtgcaagagataaatatgaaaaagcgcttgcagaacatacaaaattcggg
atgtacgagacccataaatctcatattgatcacgaaatcttcgatagggataccttcgat
ctgattcctgtcctgagaagattaaaaggaaaagcaatcaaacagatgggatcctccgga
ggaggaaatcattttgtagaattcggggaagtggaaatcaccgaagaagatgagcagatt
ggcttaccgaaaggaaaatacctgggaatactgtcgcacagcggatccagaggactagga
gccgaaatcgcccagtattattcaagagtggctgcagagcagtgtccgctgccaaaagaa
gcacagagctttgcctggctggatctgagcacccatcttggtctggaatactggacggcc
atgaaccttgccggagactatgcctcagcatgtcatgatgatatccacagaagacttgta
aaagctgttggcggaagagtaaaagccagaatagagaaccatcacaactttgcctggaag
gaaattcacaacggaaaagaagtgattgttcacagaaaaggagctactcctgccaatgag
aatgaactgggaatgatcccgggctctatgacagctaaaggattcatcgtccgtggaaaa
ggaaatccggatgctctgaactctgcgtcacatggtgcggggagagcccattcaagagga
gaatgcaggagcctttttacacagcatgacatcaaaaaagagcttaagctgaagaatgtc
accctgatgggcgggaatgcagaagaagcacctatggcgtacaaagacatcaatgaagtg
atgaacgcacaaagcgagctggtagatatcctggggacatttcagccgagaattgtaagg
atggacaaatag
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