Chitinimonas arctica: FNU76_18515
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Entry
FNU76_18515 CDS
T06695
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cari
Chitinimonas arctica
Pathway
cari03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cari00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FNU76_18515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cari03019
]
FNU76_18515
03009 Ribosome biogenesis [BR:
cari03009
]
FNU76_18515
Enzymes [BR:
cari01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FNU76_18515
Messenger RNA biogenesis [BR:
cari03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FNU76_18515
Ribosome biogenesis [BR:
cari03009
]
Prokaryotic type
rRNA processing factors
FNU76_18515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
LED_rpt
Motif
Other DBs
NCBI-ProteinID:
QDQ28178
UniProt:
A0A516SJF7
LinkDB
All DBs
Position
complement(4069220..4072243)
Genome browser
AA seq
1007 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKSNIYKAIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRVYFKEGADGRSRIQDALKEGMELIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELRATMDQLDVPAGMSIIARTAGIGRNSEELQW
DLNYLLQLWRAVENAAGSQSGPFLIYQEGSLVIRAIRDYYQPDIGEILIDTEFVYEQARQ
FMSHVMPGFVNRVKMYKDDVPLFSRFQIEHQIETAFSRDVALPSGGAIVIDHTEALVSVD
VNSARATKGGDIEETATRTNLEAADEIARQLRLRDLGGLIVVDFIDMEKAGNQREVENRL
RDALRHDRARVQTGKISRFGLMELSRQRLQPSLGETAHQPCPRCHGTGFIRGTESSALHI
LRIIQEEAMKENTGAIHAQVPVDVATFLLNEKRAEIFSVESRLKVGVVLIPNIHLETPNY
TLTRLRHDDLNHIEEVLPSYKMMEAPAEEESRNGKEAEAVKPRQEAVVKGITPAQPAPIA
AEKPVAEVAKPSLFERIIRFFKGEEVEEVKQPVPANKGGRDRGGNNTRRNEGRQRSGSER
NEPRNDSRRNEERRPGGKPRIEEDEQPRPPREPKRERGENRNAEGRNERQAETRNERTNE
VREPREPRPPREGNEARAEREPREAREPREQREPREPREQREPRPPREPRAEREPRQERQ
PRPQAEAKPVVTTEVEPEALAQDTVAADGSQGENFEGNEGRGRGRRRGRRGGRGERGERS
NDGTQAGNEADQSADGQPAETEGAPATAQLEQAAAAPVAEAAPVVEAAPVVEAAPVVEAA
LVVEAAPVVEVAPVVEAAPVVEVAPVMEAAPVVEAAPVVEAAPVVEVAPVVEAAPVVEAA
PVVEAAPVVEAAPVVEAAPVSEQKAPEAAPVERKPAPQTAEIGRPEDVGLVQVGTQLKAF
EPMDLPTAVVPTRRRRSEVKPAQQNAPVQEELVMVETAPARSETKPE
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacgcaggccgaagagctgcgcgtcgccatcgtcgac
gggcagaagctcatcgatctcgatatcgagaccgtcggcaaggagcaacgcaaaagcaat
atctacaaagccatcatcacccgcatcgagccctcgctcgaggcctgctttgtcgattac
ggcaccgaccgtcacggtttcctgccattcaaggaagtttcccgggtttatttcaaggaa
ggcgccgacggccgttcacgcatccaggatgcgctgaaggaaggcatggagctgatcgtc
caggttgaaaaggacgaacgcggcaacaagggcgcggcgctgaccacgtttatctcgctg
gccggccgctacctggtgctgatgccgaacaacccgcgcggcggtggtgtatcccgtcgt
atcgagggtgaagagcggcaggaactgcgcgccaccatggaccagctggatgtgccggcc
ggcatgtccatcatcgcccgtaccgccggtatcggccgcaacagcgaagaactgcagtgg
gatttgaactacctgctgcaactgtggcgtgcggtcgaaaatgccgccggctcgcaaagc
ggccctttcctgatctaccaggaaggcagcctggtcatccgcgccatccgcgactactac
cagccggatatcggcgaaatcctgatcgacaccgaattcgtctatgaacaggcccgccag
ttcatgagccatgtgatgcctggcttcgtcaaccgggtgaagatgtacaaggacgacgtt
ccgctgttctcgcgtttccagatcgaacaccagatcgaaaccgccttctcgcgcgatgtc
gccctgccttccggcggcgccatcgtgatcgaccacaccgaagccctggtatcggtcgac
gtcaactcggcccgcgccaccaagggcggcgatatcgaagaaaccgccacccgcaccaat
ctggaagccgccgacgaaatcgcccgccaattgcgcttgcgcgatctgggcggactgatc
gtggtcgactttatcgatatggaaaaggccggcaaccagcgcgaggtggaaaaccgcctg
cgcgatgccctgcgccatgaccgcgcccgcgtacagaccggcaagatctcgcgcttcggc
ctgatggaactgagccgccagcgcctgcagccttcgctcggcgaaaccgctcaccagcca
tgcccgcgctgccacggtaccggctttatccgtggtaccgaatcgtccgccctgcatatc
ctgcgcatcatccaggaagaggccatgaaggaaaacaccggcgccatccatgcgcaggtg
cccgtcgatgtcgccaccttcctgttgaacgaaaagcgtgccgaaatcttctcggtggaa
tcgcgcctgaaggttggcgtggtattgatccccaatatccacctcgagaccccgaactac
accctgacgcgcctgcgccacgacgacctcaaccatatcgaggaagtattgccttcctac
aagatgatggaagcgccggccgaggaagaaagccgcaacggcaaggaagccgaagcggtc
aagccgcgccaggaagccgtcgtcaagggcattaccccggcccagcccgcccccatcgcc
gccgaaaagccggtggcggaagtggccaagccatccttgttcgaacgcatcattcgcttc
ttcaagggtgaggaagtagaagaagtgaagcagccggtccccgccaacaagggcggccgc
gaccgtggcggcaataacactcgccgcaacgaaggccggcaacgcagcggcagcgagcgc
aatgaaccgcgcaacgacagccgtcgcaacgaagaacgccgcccaggcggcaagccgcgc
atcgaggaagacgagcagccgcgtccgccgcgcgaacccaagcgcgagcgcggtgaaaac
cgcaatgcggagggtcgcaacgagcgccaagccgaaacccgcaacgaacgcaccaacgaa
gttcgcgagccacgcgagccgcgtccgccgcgcgaaggcaacgaagcccgcgccgaacgc
gaaccacgggaagcacgcgaaccgcgcgagcaacgtgagccgcgtgaaccgcgcgagcaa
cgcgaaccccgcccgccgcgtgaaccgcgcgccgagcgcgagccgcgccaggaacgccaa
ccacggccgcaagccgaagccaagccggtagtgacgacggaagtcgagccggaagccttg
gcgcaggataccgtggcagcggatggcagccagggtgaaaacttcgaaggcaacgaaggc
cgcggccgcggtcgtcgtcgtggccgtcgcggtggtcgtggcgaacgcggtgaacgtagc
aatgacggcacccaggcaggtaacgaggcggatcaatccgccgacggccagccagccgag
accgagggcgcacccgccacggcgcagctggagcaagctgctgcggcacccgtcgccgaa
gctgcgccggtagtggaagctgcaccggtggtggaagctgcaccggtggtggaagctgca
ctggtagtcgaagccgctccggtagtggaagtcgcaccggtagtcgaagccgctccggta
gtggaagtcgcaccggtaatggaagccgctccggtagtggaagctgctccggtggtggaa
gctgctccggtggtggaagttgctccggtggtggaagctgctccggtggtggaagctgct
ccggtagtggaagctgctccggtggtggaagctgctcccgtagtggaagccgctcctgtg
agcgagcaaaaggctcccgaagcagcgcccgtcgaaaggaagcccgctccgcaaacggca
gaaatcggccgcccggaagatgtcggcctcgttcaggtgggtacgcagctgaaggcgttc
gagccgatggacctgcctaccgccgtcgtgcctacccgtcgccgccgcagtgaagtcaaa
cccgcgcaacagaacgcgccggtgcaagaagaactggtgatggtggaaaccgcgcccgct
cgcagcgagaccaagccggagtaa
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