Caproicibacterium argilliputei: PXC00_04995
Help
Entry
PXC00_04995 CDS
T09713
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
carl
Caproicibacterium argilliputei
Pathway
carl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXC00_04995 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carl03019
]
PXC00_04995 (rnr)
03016 Transfer RNA biogenesis [BR:
carl03016
]
PXC00_04995 (rnr)
Enzymes [BR:
carl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PXC00_04995 (rnr)
Messenger RNA biogenesis [BR:
carl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PXC00_04995 (rnr)
Transfer RNA biogenesis [BR:
carl03016
]
Prokaryotic type
tRNA degradation factors
PXC00_04995 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
OB_RNB
CSD2
RNase_II_C_S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
WOC33235
UniProt:
A0AA97DCZ5
LinkDB
All DBs
Position
1059945..1062083
Genome browser
AA seq
712 aa
AA seq
DB search
MVEDIKKGILEALQSAGEDLSSRFLMRKLNIPEKYKNTFYLALNQLRSEKKVSVDSRHLV
HLHADNSQRVPAVIISLSRTFAFARPDDGGEDLFLRGADLHGAFLGDSVLLGNIRQGLKG
PTCEVMEITEQAGTIINGSIVDEGYGPELHPDAAIRFNIPIEEFTHCGAKIGDKVQTNVH
RLPRSSHFAAQVIKTYGPSDCARICADAIIDSNAIRTVFPEEAKEEAKRIGSRAITEADL
RGRADFRDWPICTIDSASAKDLDDAISVVRTESGYRLGVHIADVSYYVRPGTALDEEARR
RATSVYLPDRVVPMLPEEISNGVCSLNAGTDKLTFSAVMEFDKAGIMTHYEFHKSVISSK
VRGVYDEVNAIFGGTASETLLQKYAPVLESLAAARELAGILKENARKAGNFDIDSSESDF
VLDENGKCIDVIPRHTGASEQMIEQLMIAANQAAAKLGKEKKLPFVYRVHENPDPDRVDS
LKELLVAIGLNPACLAHTADVTTKNFAQVMEQAAGTPKEKVVSHQLLRTMAKARYDTKPL
GHFGLALEDYCHFTSPIRRYPDTSIHRIMGAFLAGEPKAEIDRKYAEFAEESAKHSSERE
IKAMNTERSADDCYAAEYMAQHLGETYEGIISGVTMRGVFVQLQNTVEGFVPVALFTDKH
FEFDGQVSQVDEGTRERLTIGDTLRVVSVAADVSSGRIDFAPAGYELENAKL
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaagacatcaaaaaagggatactggaggcactgcagagtgccggtgaggatctt
tcctcacggtttctaatgcgcaagctgaacatcccggaaaaatacaaaaatacgttttac
cttgcgctgaatcagctgcgcagtgagaaaaaggtgagtgtggacagccgccatctggtg
catttgcatgcggacaacagccagcgtgtgcccgccgttatcatctccctttcccgcaca
ttcgcatttgcacgcccggacgacgggggcgaggatctctttctgcgcggcgcggactta
cacggtgcctttctgggggattcggtcttattgggaaacatccgtcaaggcttaaaaggc
ccaacctgcgaagtgatggaaatcactgagcaggctggtaccatcatcaacggttccatt
gtcgatgagggctacggcccagagctgcacccggacgccgccatccgctttaatattccc
atcgaggagttcacccactgcggggctaaaatcggcgacaaagtgcagaccaatgtgcac
cgcctgccgcgctcctcgcactttgccgcgcaggtgattaaaacttacggtccgtcggac
tgcgcgcgtatctgtgccgatgcaatcattgactctaacgcgattcggacggtttttccg
gaagaagcgaaagaggaagctaagcgcattggttcccgcgcaattacggaagcggacttg
cgcggccgtgcggacttccgcgactggccgatttgtaccattgacagcgccagcgcaaaa
gatttggatgatgccatcagcgtggtgcgcaccgaaagcggttatcgccttggcgtgcat
atcgcggacgtttcatactatgtgcgtcccggcacagcccttgacgaagaagcccgccgg
cgggcaacctccgtttatctgccggatcgcgtggtgccgatgctgccggaagaaatcagc
aacggtgtctgttcgctgaatgcggggacggacaagctcacgttttccgcggtcatggag
tttgacaaagccggtatcatgacgcactatgaatttcataaatcggtaattagcagcaag
gtgcgcggcgtttacgacgaagtcaatgcgattttcggcggcacagcttcagaaacgctg
ctgcaaaaatatgcgccggtgctggagagccttgccgcggcgcgcgagttggcgggcatt
ctgaaagagaacgcgcgcaaagctggcaattttgacattgacagttctgagtcggatttc
gtactggatgaaaacggaaaatgtattgatgtgattccgcgccataccggcgcctctgag
cagatgattgagcagctgatgattgcggcaaaccaggcggcggcgaaactgggcaaagag
aagaaattgccgtttgtctaccgtgtgcatgagaatccggaccccgaccgcgtcgattcg
ctgaaggaactgctggtggccatcgggttgaaccccgcctgtctggcgcacactgccgat
gtgactacgaagaatttcgcacaggtgatggagcaggccgccggaaccccgaaagaaaag
gtggtgtcccatcagctgctgcgcaccatggcaaaggcacgttacgatacaaagccgctg
gggcatttcgggctggcactggaggactactgccactttacgtcaccaattcgccggtat
ccggacacatccattcaccgcattatgggcgcattcttagcaggcgaaccgaaagcggaa
attgaccgcaagtatgcggagtttgcggaggaatccgccaaacattccagtgagcgggaa
atcaaagcgatgaacaccgagcgcagtgccgatgactgctacgctgccgaatatatggcg
cagcatcttggcgaaacgtatgagggaatcatcagcggtgtgaccatgcgcggcgtgttt
gtgcagctgcaaaatacggtggagggctttgttccggttgcgctgtttacagacaagcac
tttgaatttgacgggcaggtttcacaggttgacgagggcaccagagagcgcctgacgatt
ggcgatacgcttcgtgtggtaagtgtagcggcggatgtttccagcggccgcattgacttt
gcacctgccggctatgaactggaaaacgcgaagttataa
DBGET
integrated database retrieval system
