Caproicibacterium argilliputei: PXC00_10785
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Entry
PXC00_10785 CDS
T09713
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
carl
Caproicibacterium argilliputei
Pathway
carl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PXC00_10785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carl03019
]
PXC00_10785
Enzymes [BR:
carl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PXC00_10785
Messenger RNA biogenesis [BR:
carl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PXC00_10785
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Phage_integrase
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
WOC31684
UniProt:
A0AA97D7D0
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All DBs
Position
complement(2236084..2237616)
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AA seq
510 aa
AA seq
DB search
MDFQSLQIMQPILKNLERAGYQTPTPIQQQAIPQVLQGRDLFGCAQTGTGKTAAFAVPIL
QKLEENRVSGRPIRALILTPTRELAIQIFDNFRAYGKSLHQNCCVIFGGVSQNGQVQNLQ
RGVDILVATPGRLNDLIGQGYIDLSHLEIFVLDEADRMLDMGFIHDVKRVIAQLPAQRQN
LMFSATLPKEIRALVDSILQDPVKISVTPPATTVEAIDQSVYYVDKGNKCRLLIWLLKDP
RISSALVFTRTKHGADRVVRDLSRAGIASAAIHGDKTQNARQAALTKFKSHQVRVLVATD
IAARGIDIDELSHVINYDIPEVPETYVHRIGRTARAGHSGTAVSFCSINEKADFLGILKL
IKKEVPEITEHPYPMQELVPMSKEELRRKQAERQQAARAARERRRQQEQNRRPEKKRNPA
PAAKAAGAQQRPPKKQHTASKVQQPPRPQETAQPPVKQKPKAPRVKTGKTGKAPVQKRTQ
QHREPRPDLEKYLPKPLRKRPTDQPLKHHL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atggattttcaatcattacagatcatgcagccgattcttaaaaacctggagcgggcgggg
taccaaacgccgacgccgattcagcagcaggcgattccgcaggtgctgcaggggcgcgac
ctttttggctgcgcccaaaccggaaccggcaagacagcggcatttgcagtgccgattctg
cagaagctggaggaaaaccgcgtcagcggtcggcccatccgcgcactgattttgacaccg
acccgcgagcttgccatccagatttttgacaactttcgcgcgtacggcaaaagcctgcac
cagaactgctgcgtgatttttggcggtgtcagccaaaacggccaggtgcaaaacctgcag
cgcggggttgacattctggttgccacgccgggtcggctcaatgacctgattgggcagggc
tatattgacctttcccatttggaaatttttgtactggatgaagccgaccggatgcttgac
atgggcttcattcacgatgtgaagcgcgtgattgcccagctgccggcgcagcgccagaac
ctgatgttcagcgcaacgctgcccaaagaaatccgcgcactggtggacagcatcctgcag
gacccggtcaaaatcagcgtgacacctccggctaccaccgtggaggcgattgaccagagt
gtgtactatgtggacaaaggcaataagtgtcggctactcatttggctgctgaaagacccg
cgcatttcctccgcgctggtgttcactcgtaccaagcacggcgcggaccgcgtggtgcgc
gacctgagccgcgcggggattgcttccgcggcaattcacggtgacaaaacacagaatgcc
cggcaggcggcgctgaccaagtttaaaagtcaccaggtgcgtgtgctggttgcaacagac
attgccgcgcgcggcattgatattgacgagctttcgcacgtgatcaattatgacatcccc
gaagtgccggaaacctatgtgcaccgcattgggcgcaccgcgcgcgcagggcacagcggc
accgcggtttcgttctgcagcattaacgaaaaggcggacttcctcggtatcctcaagctg
ataaaaaaggaagtgccggagatcacggagcatccgtatcctatgcaggagttggttccc
atgagcaaagaggaactgcgccggaagcaggcggaacgccagcaggccgcgcgcgctgcc
agggaacgccgccgccagcaggagcaaaaccgccgtccggaaaagaagcggaaccctgcg
cctgctgccaaagcagccggtgcgcagcagcgcccgccgaaaaagcaacacacggcgtca
aaggttcagcagcccccccgcccgcaggaaacggcacagccgccggtgaagcaaaagccg
aaagcaccgcgcgtgaaaaccggaaagaccgggaaggcgccggtgcagaagcgcactcag
cagcaccgcgagcctcggccggatttggaaaaatacctgcccaagccgctgcgcaagcgc
ccgacggatcagccgctgaaacatcatctgtaa
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