Carnobacterium sp. PL17GRE32: FPV25_02990
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Entry
FPV25_02990 CDS
T06316
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
carn
Carnobacterium sp. PL17GRE32
Brite
KEGG Orthology (KO) [BR:
carn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
carn03009
]
FPV25_02990 (rlmD)
Enzymes [BR:
carn01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FPV25_02990 (rlmD)
Ribosome biogenesis [BR:
carn03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FPV25_02990 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_25
MTS
N6_Mtase
RrnaAD
Cons_hypoth95
PrmA
Methyltransf_32
N6_N4_Mtase
Methyltransf_11
DOT1
Methyltransf_4
2-ph_phosp
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
QEM53966
UniProt:
A0A9W7S3H6
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All DBs
Position
679968..681365
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AA seq
465 aa
AA seq
DB search
MMINMKQKYTTPIQKNESFEGTIEDLTFQGLGVVKVDGYPLFVEDALPGEVGTIKAISVG
KKFGYGKMMERTVDSPDRVDIVDKVSSQVGTMPLQHMTYESQLAFKQKQVENAFSRFGLA
KGRKVLPTISSENTFKYRNKAQIPIGTDNEGKLYSGFYRKNTHEIIPVEDFKVQLPGIDE
AIAKIVDIFNKHELKGYDEVKHSGLVRNIVIRKGYYTNQMMVIIVINGKDLPNEDQIVNE
IVEKVPEVVSIVLSSNTKQTNVVMSGKQRVLYGVDKYEDKMFDFTFDISSRSFFQINTPQ
AEKLYQLAIDAADLTGEETVVDAYCGIGTITMALAKKAKQVYGVEAVSDAVKMAKNNAAL
NYIDNVHFETGQAETVMGEWVKAGVQPDVVVVDPPRKGLDDTFIESTIEANPEKIVYVSC
NPTTMARDIAKFVEAGYDFEQVQPLDMFPQTWHVEATCRLIRKEK
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgatgataaatatgaaacaaaaatatacaacgccgattcaaaagaacgaatcttttgag
gggacaattgaagaccttactttccaaggattaggtgtggttaaagtggatggttatcca
ctattcgtagaggatgctttaccaggtgaagtggggacaattaaggccatttctgtgggt
aaaaagtttggctatggaaaaatgatggagcgaacagtggattcaccggaccgggtagac
attgtggataaggtatcaagccaagtgggtacaatgccactgcaacatatgacttatgaa
tcccaacttgcttttaaacaaaaacaagtagagaatgcttttagtcgttttggtctagct
aaagggcgtaaagtactgcctactataagttctgaaaatacatttaaataccgtaataaa
gcacaaattcctatcggtactgataatgaagggaaattgtattcaggcttttaccggaaa
aatacacatgagattatccctgtggaagattttaaagtccaattgccaggcattgatgaa
gctatcgcaaaaattgtagatatctttaataaacatgagttgaaaggctacgacgaagtt
aaacattcaggattagtacgtaatattgtgatccgtaagggttactatacaaaccagatg
atggtcattattgtaattaacggaaaagatctaccgaatgaagaccaaattgtaaatgaa
attgttgaaaaagtaccagaagttgtgtctattgtcttgagttcgaatactaaacaaaca
aatgtcgtaatgtcaggtaaacaacgtgtgctatatggtgtggataaatacgaggataag
atgtttgatttcaccttcgatatttcaagtcggtcattcttccaaattaatacacctcaa
gctgaaaagttatatcaattagcgattgatgcggctgatctaacaggtgaagaaacagta
gtagacgcctactgtggtattggtacaattaccatggcattagctaaaaaagccaaacaa
gtatatggggtagaagctgtgtctgatgcggttaaaatggccaagaataatgcagcttta
aactatattgataacgtccattttgaaacaggacaagctgaaacggtaatgggtgaatgg
gtcaaagcgggcgttcaaccggacgtcgttgttgtagacccaccacgtaaaggcttagat
gatactttcatcgaatcaacaattgaagctaacccagaaaagattgtctatgtttcgtgc
aatccaacaactatggcacgagacatcgcaaaattcgtagaagcaggctatgacttcgag
caagttcaaccattagatatgttcccacaaacttggcacgttgaagcaacctgtcgcctt
atcagaaaggaaaaataa
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