Carnobacterium sp. PL17GRE32: FPV25_03270
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Entry
FPV25_03270 CDS
T06316
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
carn
Carnobacterium sp. PL17GRE32
Pathway
carn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPV25_03270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carn03019
]
FPV25_03270
03009 Ribosome biogenesis [BR:
carn03009
]
FPV25_03270
Enzymes [BR:
carn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FPV25_03270
Messenger RNA biogenesis [BR:
carn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPV25_03270
Ribosome biogenesis [BR:
carn03009
]
Prokaryotic type
rRNA helicases
FPV25_03270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEM54018
UniProt:
A0A9W7S372
LinkDB
All DBs
Position
complement(725521..727062)
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AA seq
513 aa
AA seq
DB search
MKFNEMNLSKPLLRAVEEMGFEEATPIQAETIPMALEGQDIFGQAQTGTGKTAAFGLPLL
EKIHDNSRVQALIIEPTRELAVQTGEELYRLGKMKGIHTTTVYGGASIGHQIKLLKKNPP
VVIGTPGRILDLIKRGVLKLKDVETLVLDEADEMLKMGFVEDIESIIRELPTERQTLLFS
ATVPKEIKRIADNFMKNPTTVHVKAKAMTAELIDQYYTRCKDYEKFDLLTRFIDVQNPEL
SIVFARTKRRVDEVARGLVERGYSAEGIHGDLSQDKRLGVLRNFKNNKLDILVATDVAAR
GLDISGVTHVYNFDIPQDPESYVHRVGRTGRAGKEGMAVTFVTGNEMSYLHTIENLTKKP
MTALRPPTSQEAFNGQVANIAKVVKELTEIDDTEMYQDAVKFLSETYTEEEIALALVRSL
VKDPSTVKVDITPERPLPNRGGGGNKRNFNRNGNRNRGGNRDRNNNRGDRSGSDRKGGYK
GNAKDKNRNNYDRKKSNGGNKQSNGKSAEFKIR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaatgaaatgaatctatcaaagccactgcttcgcgctgtcgaagaaatgggt
tttgaggaagcaacaccaatccaagccgaaaccattccgatggcacttgagggacaagat
atctttggacaagcccaaacaggtactggtaaaacagcagcctttggtttaccattgtta
gaaaaaatccatgacaacagtcgtgtacaagccttaattatagagccaacacgtgagtta
gctgtacaaacaggtgaagaattataccgactaggtaaaatgaaaggcatccacacaaca
actgtttacggtggagcatctatcggacaccaaatcaaattattgaaaaagaacccacca
gttgttatcggtacaccaggacgtattttagatttaattaaacgtggcgtattaaaatta
aaagacgttgaaacattagtgttagatgaagctgatgaaatgttaaaaatgggcttcgtt
gaagatatcgaatcaatcattcgtgaattaccgactgagcgtcaaacgttattattctct
gcgacagtacctaaagagattaaacgtattgcagataacttcatgaaaaatcctacaaca
gtacatgtcaaagcgaaagcaatgactgctgaattgattgatcaatactatacacgttgt
aaagattacgaaaaattcgatttactaacacgttttatcgacgtacaaaatcctgaattg
tcaatcgttttcgcccgtacaaaacgtcgtgtagatgaagtggcacgtggtttagttgaa
cgtggttattctgctgagggtatccatggtgacttgagtcaagataaacgtttaggcgtt
ttacgtaacttcaagaacaacaaattggatattttagttgcgacagacgttgcggcgcgt
ggattagatatctctggtgtaacacatgtttacaacttcgatattccacaagatcctgaa
tcatacgttcaccgtgttggtcgtacaggtcgtgctggtaaagaaggtatggcagtaact
ttcgtaacaggaaatgaaatgtcttacctacacacgattgaaaacctaaccaagaaacct
atgacagcacttcgtccacctacatcacaagaagcgtttaatggacaagttgcgaatatc
gcaaaagttgtaaaagaattgactgaaatcgatgatacagaaatgtaccaagatgctgtg
aaattcttatcagaaacatatactgaagaagaaattgcgctagctttagtccgttcattg
gttaaagatccttctactgtaaaagtagatatcacaccagaacgtccattaccaaaccgt
ggcggtggcggtaacaaacgtaacttcaaccgtaatggtaaccgtaatcgcggtggtaac
cgtgaccgtaacaacaaccgtggcgaccgtagtggtagtgaccgcaaaggtggttacaaa
ggtaatgctaaagacaaaaaccgtaacaactacgaccgtaaaaaatcaaacggtggtaac
aaacaatctaatggtaaatcagcagaatttaaaattcgttag
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