Carnobacterium sp. PL17GRE32: FPV25_03340
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Entry
FPV25_03340 CDS
T06316
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
carn
Carnobacterium sp. PL17GRE32
Pathway
carn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPV25_03340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carn03021
]
FPV25_03340
03019 Messenger RNA biogenesis [BR:
carn03019
]
FPV25_03340
Transcription machinery [BR:
carn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FPV25_03340
Messenger RNA biogenesis [BR:
carn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FPV25_03340
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
ATPase_2
AAA_22
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
QEM54031
LinkDB
All DBs
Position
complement(738541..739830)
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AA seq
429 aa
AA seq
DB search
MSDNEQEHVKLHSLQAMTLKEIYQYAKAYKVPYYSQMNKKELIMAVLRAQEVSQGFMNVE
GVLDITGSDFGFLRSINYSPSQEDIYISNSQIRRFGLRNGDLVSGTARPPKASERYLGLM
HVYAVNGKDPDEAKERAHFPALTPVYPDEQLRLESTPGRLSARMIDLISPVGYGQRGLIV
APPKAGKTVLMKEIANGITANNPEVELIMLLIDERPEEVTDLERSIDGEVVSSTFDQRPE
NHVRIAELVLERARRLVEDKRDVVILMDSITRLARAYNLVEKPSGRTLSGGIDPAAFYKP
KKFFGSARNIEDGGSLTILATALVDTGSRMDDMIYEEFKGTGNAEIHLSRDLAESRVFPA
IDIRRSSTRKEELLHDESTLKVLWKLRQTMKGDMLVYTNEMLKEMKKTETNDQFIDRLGT
FLDKGKKGK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcagataatgagcaagaacacgtgaagttgcatagtttgcaagctatgactttgaag
gaaatttaccagtatgcgaaggcttataaggtcccttattatagtcaaatgaataagaaa
gagctgattatggctgtcttgcgggcgcaagaggtgagtcagggctttatgaatgtcgag
ggtgtgcttgatattacggggtctgattttggtttcttgcggtcgattaattattcgcct
agtcaggaagatatttatatttctaattctcagattcgccggtttggtttgcggaatggg
gatttggtgtcgggtacagctcgtccgcctaaggcttctgagcggtatttgggcctgatg
catgtgtatgcggtgaatggtaaggaccctgatgaggcgaaggaacgggcgcatttccca
gccttgacccctgtttatccggatgagcaattacggttggagtcgacgcctggacgtttg
tctgcgcggatgattgatttgatttcgcctgttggttacggtcaacgtggtttgattgtg
gcacctcctaaggctggtaagacggtcttgatgaaggaaatcgccaacgggattacagct
aataatccggaggttgagttgattatgctgttaattgatgagcgtcctgaagaggtgacg
gatttggagcggtcaattgatggggaagtggtttcttctactttcgatcaacgacctgaa
aaccatgtgcggattgcggaattggttttagaacgcgctcgccgtttggtggaagataag
cgtgatgtggttattttgatggattcaattacgcgtttagcccgtgcttacaacttggtt
gagaagccgagtggccggacgctatctggtggtattgatccagcggctttctataagccg
aagaaattctttggttcagcccgaaatattgaagatgggggttccttaactattctggcg
acagctttagtagatacgggttctcgtatggatgatatgatttatgaggagttcaaggga
acgggtaatgctgagattcacttatctcgtgacttggcagagtctcgtgtcttcccagcg
attgatattcgtcgttcgtctacacgtaaggaagagttgttgcatgatgagtcgaccttg
aaagttttatggaaattgcgccagacgatgaagggtgatatgttggtttataccaatgaa
atgctgaaggaaatgaagaaaactgaaactaatgaccagttcattgaccgacttggtacc
tttttagataaggggaaaaagggcaaatag
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