Carnobacterium sp. PL17GRE32: FPV25_03640
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Entry
FPV25_03640 CDS
T06316
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
carn
Carnobacterium sp. PL17GRE32
Pathway
carn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
carn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPV25_03640 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
carn03021
]
FPV25_03640 (rpoC)
03400 DNA repair and recombination proteins [BR:
carn03400
]
FPV25_03640 (rpoC)
Enzymes [BR:
carn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPV25_03640 (rpoC)
Transcription machinery [BR:
carn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPV25_03640 (rpoC)
DNA repair and recombination proteins [BR:
carn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPV25_03640 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QEM54084
UniProt:
A0A9W7VQM1
LinkDB
All DBs
Position
complement(800508..804164)
Genome browser
AA seq
1218 aa
AA seq
DB search
MVDVNRFESMRIGLASPDKIRSWSYGEVKKPETINYRTLKSEKEGLFDERIFGPSKDWEC
SCGKYKGIRYAGVVCDRCGVEVTRSKVRRERMGHIELATPVTHIWYFKGIPSRMGLMLDM
SPRSLEEVIYFASYVVTDAGDTPLDYKQLLSEKEYRDNKREYGEGFKAAMGADAIKTLLS
QVQIDSEVVELKEELKTAKGQKRTRAIRRLDVLDAFRKSGNDPAWMVMDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALFDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMYQAGLPKE
MALELFKPFLMRELVARDMAINVKHAKRKIEHQDEDVWDVLGEIIREHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCEAYNADFDGDQMAVHLPLGEEAQAEARLLMLAATHIL
NPKDGQPVVTPSQDMVLGNYYLTMEEPEVMGEGMLMSSINEAHIAYTNGYVQLHTRVAFP
TDALPKKPWTENQKGKLMVTTIGKLFFNEVMPEEFPYINEPTTENLESSLSDKFIMEPGT
DVKEFISRQDMVSPFKKKYLARIIAQVFKVSKITETSIILDKMKDLGFKYSTRSGITVGV
ADITNLESKAASIQKGHDRVDKITKQYRRGLITDDERYDQVIDTWNKVKDEIQIALMNSL
DQDNPFFIMSDSGARGNISNFTQLAGMRGLMAGPNGKIIELPILSNFREGLTVQEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREADCGTDRGLAIEAIKNGNEVIETLE
ERLTGRYLQKEVRHPETGEIIAHHNELIDEQTARRIVEAGIEQVTIRSAFTCNTRHGVCK
HCYGRDLSTNQEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIV
EARHPKGRAVITEVAGEIEAIEEDEASRTKTVFVKGMTDSREYKVPYTARMNVAEGDTVH
RGQQLTEGSIDPKDLLRVTNTLTVETYMLDEVQRVYRSQGVDINDKHVEVMVRQMLRKVR
VLDPGSTDLLPGKLMDTADFTDANTQAIRSGELPATARPVLLGITKAALETNSFLSAASF
QETTKVLTDAAIRGKEDHLLGLKENVIIGKIIPAGTGMARYREMEPKKIGDTQQLIYGEE
VDEDADISQIDYSSIQEN
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
ttggtagatgtaaatagatttgaaagcatgcgtatcgggttagcttcaccagacaagatc
agatcatggtcttacggtgaggttaagaaacccgaaaccatcaactaccgtacacttaaa
tcagaaaaagaaggtctattcgatgaaagaatctttggaccttctaaagactgggaatgt
tcttgtggtaaatacaagggcattcgctatgctggtgttgtctgtgaccgttgtggcgtt
gaagttacacgttctaaagtgcgtcgtgaacgtatgggtcacattgaattagcgacacct
gtaacacatatttggtacttcaaaggtatcccatctcgtatgggcttgatgttagacatg
agcccacgttcgcttgaagaagttatctacttcgcatcttacgttgtaacagatgctggt
gatacgccattagattacaaacaattgttatctgaaaaagagtaccgcgataacaaacgc
gagtacggcgaaggttttaaagcagcaatgggtgctgacgccatcaagaccttgttatca
caagttcaaattgatagcgaagttgttgaattaaaagaagaattgaaaacagctaaaggt
caaaaacgtactcgtgcaattcgtcgtttagacgttttagatgctttccgtaaatcaggt
aacgatcctgcgtggatggtaatggatgttattccagttatcccaccagaattacgccca
atggttcaattagatggtggccgtttcgctacgtctgacttgaacgacttgtaccgtcgt
gtaatcaaccgcaacaaccgtttgaaacgtctattagacttaaatgcaccaaatattatc
gtgcaaaatgaaaaacgtatgttacaagaagcggttgatgctttattcgataacggtcgt
cgtggtcgtccagttactggtccaggtaaccgtccattgaaatcattatcacacatgctt
aaagggaagcaaggacgtttccgtcaaaacttacttggaaaacgtgttgactactctggt
cgttcagtaatcgttgttggtccttcgttgaagatgtaccaagctggtttaccaaaagaa
atggcccttgaattattcaaaccattcttaatgcgtgaattagttgcccgcgatatggca
atcaacgtgaaacatgcaaaacgtaaaatcgaacaccaagatgaagatgtgtgggacgtt
ttaggcgaaatcattcgtgaacatccagttctattgaaccgcgcacctaccttacaccgt
ttaggtatccaagcctttgaaccggtattggttgaaggtaaagcaatccgtcttcacccc
cttgtgtgtgaagcctacaatgccgactttgatggtgaccaaatggccgtccatttacca
ttaggtgaagaagcgcaagcagaggcacgtttattaatgctagctgctacgcatatcttg
aaccctaaagatggtcaaccagttgttacaccgtctcaagatatggtcttaggtaactac
tacctaacaatggaagaacctgaagtaatgggtgaaggtatgttaatgtcttctattaat
gaagcgcatatcgcctacactaacggttatgtgcaattacatacacgagttgcattccca
acagatgcactacctaaaaaaccttggactgaaaaccaaaaaggtaaattgatggtgaca
actatcggtaaattattctttaacgaggtaatgcctgaagagttcccgtacatcaacgaa
ccaacaactgaaaacttagaatcatctctatctgacaagttcatcatggaaccaggtaca
gacgtaaaagagttcatcagtcgtcaagatatggtttcaccattcaagaaaaaatactta
gcgcgtatcatcgcacaagtatttaaagtatctaagattactgaaacttcaattatcttg
gataaaatgaaagacttaggtttcaaatactctacacgttcaggtattaccgtaggtgtg
gcagatattacaaacctagaatcaaaagcggcgtctatccaaaaaggacatgaccgtgtt
gacaagattacaaaacaataccgtcgtggtttgattacagacgacgaacgttatgaccaa
gttatcgatacttggaacaaagtaaaagatgaaatccaaatcgccctaatgaactcactt
gatcaagataacccattcttcatcatgtccgattcaggtgcccgtggtaacatctctaac
tttacccaacttgctggtatgcgtggtttgatggctggacctaacggtaagatcatcgag
ttacctatcttgtctaacttccgtgaaggtttgaccgtacaagaaatgtttatctcgacc
cacggtgcccgtaaaggtatgaccgatacggcccttaagacagccgattcaggttacttg
actcgtcgtcttgttgacgttgcccaagatgtcatcattcgtgaagcagactgtggcact
gaccgtggtttagcgattgaagcaatcaagaatggtaacgaagtgattgaaacacttgaa
gaacgtttgactggccgttatttacaaaaagaagtacgtcatccagaaactggcgaaatc
attgcgcaccacaacgaattaatcgacgaacaaactgctcgtcgcatcgttgaagctggt
attgagcaagtaacgattcgttcagccttcacatgtaacactcgtcacggtgtatgtaaa
cattgttacggacgcgacctatctactaaccaagaggtagaagtaggggaagcagttggt
acaattgctgcacaatctatcggtgagccaggtacacagttaacaatgcgtacattccat
actggtggggtggccggtgatgacatcactcaaggtcttcctcgtatccaagagattgtt
gaagcacgtcatccaaaaggtcgtgccgtgattactgaagttgctggagaaatcgaagca
atcgaagaagacgaagcaagccgtacgaagacagtatttgttaaaggtatgacagactct
cgtgagtataaagtaccttacacagcgcgtatgaacgttgctgaaggcgatactgttcac
cgcggacaacaattaacagaaggttcaatcgatcctaaagacttactacgtgtaacaaac
acactgactgttgaaacatacatgttagatgaagttcaacgtgtataccgctctcaaggg
gtagacatcaatgataaacacgtggaggttatggttcgtcaaatgctacgtaaagtacgt
gtccttgacccaggttcaacagacttgttaccaggtaagttaatggatactgcagacttt
acagatgccaatacgcaagcaatccgttcaggtgaactacctgcaacagcgcgcccagta
ttattaggtatcactaaagctgccttagaaactaacagtttcctatctgcagcctcattc
caagaaacaactaaagtcttaactgacgcggctatccgtggtaaagaagaccacttactt
ggattgaaggagaacgttattatcggtaagattatccctgcaggtacaggtatggctcgt
taccgtgaaatggaaccgaaaaaaatcggtgacacacaacaactaatctacggcgaagaa
gtagatgaagatgctgatattagccaaattgactactcaagtattcaagaaaactaa
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