Carnobacterium sp. PL17GRE32: FPV25_06320
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Entry
FPV25_06320 CDS
T06316
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
carn
Carnobacterium sp. PL17GRE32
Pathway
carn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
carn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPV25_06320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
carn03019
]
FPV25_06320
03400 DNA repair and recombination proteins [BR:
carn03400
]
FPV25_06320
Enzymes [BR:
carn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FPV25_06320
Messenger RNA biogenesis [BR:
carn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FPV25_06320
DNA repair and recombination proteins [BR:
carn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FPV25_06320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Helicase_C_2
RecQ_Zn_bind
Glyco_hydro_57
TniB
PP_kinase_N
AAA_22
NNH3
Motif
Other DBs
NCBI-ProteinID:
QEM54572
UniProt:
A0A9W7S208
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All DBs
Position
1357894..1359375
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AA seq
493 aa
AA seq
DB search
MMTDWHKRLEEVTGYQTFKPGQLASLEALDRQENVVAILPTGGGKSLIYQINQYNESGVT
LIISPLISLMQDQVSQLQRMGLGRGIALNSTYDRGEQAYILSHLSDYQFLFLSPEMLLKD
QVIRALQRMDIQLLVVDEAHCISQWGYDFRPQYTELKKVRQLLKQPKTLALSATANQSTL
ADIKAYLFEDGEPIQLVKESVDRPNIFYLFDEIDAGEVRVNKLQDWLDRLPKPGIVYVHH
KSELEELNQWMKDHTDLRVASYHGDRSLEDRHIIQSQFLQNELDVVFATSAFGMGINHGH
IRFVLHYHLPKNMADFIQEVGRAGRDQEQSVSIVLYDHREAARLQQMRRLLEDEADLLDD
LLERLFKHALTQSEVDQYADSISAMLYFYRHHFTDHQTAKVHAQKLRQERLRQIYQMLDL
MATDQCYRTFLLEQADEQVVDRPDLCCSNCQPDYVSQPIWQDLMARPNRVTVEKDQHDDF
KGMWTQRLQHLLS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgatgacagattggcataaacgcctggaagaagtgacaggttaccaaacatttaaaccc
gggcaattggcgagtttagaggctttagaccgacaggaaaacgtggtggccattttacca
actggtggaggtaaatctttaatataccaaatcaaccaatataatgaatctggtgtaaca
ttgatcatttcgcccttgatttccctgatgcaagaccaagtcagtcaattacaacggatg
ggattaggacggggcattgccttaaattctacctatgaccgcggggaacaagcttatatt
ttaagccacctatctgactatcaattcctatttctatcaccagaaatgctcctgaaagat
caagtaatcagggccttacaacggatggacattcaattattagttgttgatgaagcccac
tgtatttctcaatggggttacgacttcagaccgcaatatactgaattgaaaaaggttcgt
cagctcttaaagcaaccaaaaacattagccttatctgctactgccaaccaatccacacta
gcagatatcaaggcttacttatttgaagatggagaacctattcaactggtaaaagaatca
gttgaccgaccaaatattttctacctattcgatgaaattgacgccggtgaagtgagggta
aacaaattgcaggattggttagaccggttgcctaagccaggaattgtttatgtccaccat
aaaagtgaactcgaagaactcaaccaatggatgaaagatcatacagatttgcgggtcgct
tcttaccatggggatagaagtctagaggataggcatatcatccaaagtcagtttctacaa
aatgaattggatgttgtttttgcaacgtcagcctttggtatgggaattaaccatggtcat
atacgctttgtcttgcattatcatctccctaagaatatggcagactttattcaagaagtc
gggcgggcaggacgagatcaggaacaatcagtgtcaattgtcttatacgatcatcgcgag
gcagctagactgcagcaaatgcgccgattattagaagacgaggcagacttgttggatgat
ttattggaacggctgtttaaacacgccttaacccaaagtgaagttgaccaatacgcagat
agcataagtgccatgttgtacttttaccgccatcattttacggatcaccaaacagcaaaa
gtacatgcccaaaaacttcgtcaggaacggctacggcagatctaccaaatgttagattta
atggctactgaccagtgttaccggactttcttattagaacaagccgatgaacaggtagtg
gatagaccagacttatgttgcagtaattgccaacctgactacgtcagtcaaccgatatgg
caagacttaatggcccgaccgaatcgagtgacagtcgaaaaagaccaacatgatgatttc
aagggaatgtggacccaacgtttgcagcacttattatcttga
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