Citrobacter arsenatis: E1B03_05250
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Entry
E1B03_05250 CDS
T07503
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
cars
Citrobacter arsenatis
Brite
KEGG Orthology (KO) [BR:
cars00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cars03019
]
E1B03_05250 (hrpB)
Enzymes [BR:
cars01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E1B03_05250 (hrpB)
Messenger RNA biogenesis [BR:
cars03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E1B03_05250 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
CON_HrpB
Helicase_C
AAA_22
AAA_19
DUF2732
HA2_N
Motif
Other DBs
NCBI-ProteinID:
QBM21866
UniProt:
A0A4P6WIV6
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All DBs
Position
908191..910665
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AA seq
824 aa
AA seq
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MLQCSAKNVNPLEPFVTSLPVAAVVPELLTALDASSQVLLTAPTGAGKSTWLPLRLLEHR
GIKGRIILLEPRRLAARNVAQRLAELLNEKPGETVGYRMRAQSCVGPQTRLEVVTEGVLT
RMIQRDPELTGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNGRLQ
QMLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAIATAELLRHESGSLLLFLPGVGEI
LRVQEQLATRVGGDVLLCPLYGALTLAEQRQAILPAPQGLRKVVLATNIAETSLTIEGIR
LVVDCAQERVARYDARTGLTRLITQRISQASMTQRAGRAGRLEPGICLHLLAKEQAERAA
SQGDAEILQSDLSGLLMELLQWGCTEPDQLNWLDTPPAVNLQAAKRLLQMLGALEGDRLS
ARGQKMAVLGNDPRLAAMLVSATDENEAATAAKLAAILEEPPRGGSTDLAVAFSRNQPAW
QQRSQQLLKRLNVRSGQPDSTLLAPLLAQAFADRIARRRGQEGRYQLANGMGAMLDADDA
SGRHEWLIAPLLLQGSASPDARILLALPLDIEALTQACPELLQQSDTIEWDETQGTLKAL
RRSRIGQLTVKVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLQCAANWLP
EYDWPTVDEDSLLATLEDWLLPHMSGVHSLRALKALNVGQALRGLLDWSMLQRLDSELPS
HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQVT
SDLSAFWQGSYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgcagcgcgaagaatgttaaccctctggagccatttgtgacgtcgttgccc
gttgccgccgtagtgcctgaactgcttaccgcccttgatgcctcgtcgcaggttctgctg
acggcgccgaccggtgccgggaaatcgacctggctgccgttacgacttcttgagcatcgc
ggtatcaagggacggattattttgctggagccgcgccgcctggcggcacgcaatgtagcg
cagcggttagcggaattgctgaatgaaaagcccggcgagaccgtggggtatcgcatgcgc
gcgcaaagttgtgtagggccgcagacccgccttgaggtcgtgacagaaggtgttctgact
cgcatgatccagcgcgatcccgaactgacgggcgtcgggctggtgattctcgacgaattt
cacgagcggagtttgcaggccgatctggcgctggcgctgttgctggacgtgcagcaaggg
ctgcgtgacgatctgaaactgttgatcatgtccgccaccctggacaacggtcgcttacag
cagatgttgcccgatgcgccgacgatcgtctcggaaggccgtgcatttcccgttgagcgg
cggtatcaacccttggcagcgcatttgcgttttgatgaagcggtggcgatagcgacggcg
gaactattgcgccatgaaagcgggtcgttgctgctatttttaccgggggtgggcgaaatc
ctgcgcgtgcaggagcaactggcaacgcgtgtgggcggcgatgtgctgctgtgcccactg
tatggcgcattgacgcttgccgagcagcgtcaggcgattttgcctgcgccgcaaggtctg
cgcaaggtggtgctggcgaccaatattgccgaaaccagtttaacgattgaaggcatccgg
ctggtggtggactgcgcccaggagcgcgtggcgcgctatgacgcacgtaccggtttgacg
cgactgattacccagcgcattagccaggcctcgatgacacagcgagcgggacgagcgggc
cgtctggagcctggtatctgtttgcatttgcttgccaaagagcaggcggaaagagcggcg
tcgcagggagacgcggagatattacagagcgacctgtccgggctactgatggaattgttg
cagtggggatgtaccgaacccgatcaactgaactggctggatacgccgcccgccgtcaat
ctgcaggcggcaaaacggctgctgcagatgctgggtgcgcttgagggcgacaggctcagc
gctcgcgggcagaaaatggcggtgttaggtaacgacccccgtttagcggcgatgctggtt
agcgccaccgatgagaacgaagcggcaacggcggcaaaactggctgcgattctggaagag
ccgccgcgcggcggcagtaccgatctggcagtcgcgttttcacgaaatcagcccgcctgg
cagcagcgcagtcaacaattactgaaacggcttaatgttcgcagcggacagcccgacagc
acgctgctcgctccgttgctggcgcaggcgtttgccgatcgaatcgcgcgtcgacgcggg
caggaagggcgttatcaactggccaacggcatgggggcaatgctggatgccgatgatgcc
tccggacgccatgaatggctgatagcccctctgttgctacagggcagcgcttcgccggat
gcgcgtattctgctggccttaccactggatatcgaggcgctgacgcaggcatgccctgag
ctgctgcaacagtccgatactatcgaatgggatgaaacccagggaacgttaaaggcattg
cgtcggtcgcgcattggtcagctcacggtaaaagtacagccgctggccaagccctcggaa
gaggagttgcatcaggcgatgttgaacggcattcgcgataaagggctaagtgtgctcaac
tggacgccggaggccgagcagtttcgcctgcgtttacaatgtgcggcaaactggttgccg
gagtatgactggcccacggtagatgaagattctctgctggcgacgctggaagactggctg
ctgccgcacatgagcggtgtacactcgttacgcgcgttaaaagcgctaaatgtagggcag
gcgttgcgtggtttgctggactggtcaatgctgcaacgtctggatagtgaactgccgtcg
cattacactgtgccgacaggaagccggatcgccattcgctatcatgaggataatcctcca
gcactggcggtgcggatgcaggaaatgtttggtgaagcaaagaccccgaccatcgcccag
ggacgcgtgccgctggtgctggagctgctgtctcctgctcaacggccgttacaggtgacg
agcgatttgagcgcgttctggcagggatcgtaccgcgaggtgcaaaaagagatgaaaggg
cgttatcccaaacatgtctggccggacgatccggcgaataccgcgccaacgcggcgcacc
aaaaagtattcgtaa
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