Cryobacterium arcticum: PA27867_1336
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Entry
PA27867_1336 CDS
T04435
Name
(GenBank) cold-shock protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cart
Cryobacterium arcticum
Pathway
cart03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cart00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PA27867_1336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cart03019
]
PA27867_1336
03009 Ribosome biogenesis [BR:
cart03009
]
PA27867_1336
Enzymes [BR:
cart01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PA27867_1336
Messenger RNA biogenesis [BR:
cart03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PA27867_1336
Ribosome biogenesis [BR:
cart03009
]
Prokaryotic type
rRNA helicases
PA27867_1336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ANP72298
UniProt:
A0A1B1BIE8
LinkDB
All DBs
Position
1:complement(1525121..1527115)
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AA seq
664 aa
AA seq
DB search
MGESFQTRAVPGSSTRLTADGEKFPSGSAQNQAKWPHTNGGLSPTDYRSSMTPPDSTAPT
EADTARATITFSELGLSDSVLKALKDVGYETPSAIQAATIPPLLDGRDVVGLAQTGTGKT
AAFALPILSRLDLSQKSPQALVLAPTRELALQVCEAFEKYAAHMKGVHVLPVYGGQGYGI
QLSALRRGVHVVVGTPGRIMDHLEKGTLDLTQLKYLVLDEADEMLKMGFAEDVETILADT
PDDKQVALFSATMPAAIRRISKQYLNDPEEITVKNKTTTSANTTQRYLLVSYPQKVDALT
RILEVENFEGMIVFTRTKNETETLAEKLRARGYSATAINGDVPQVQRERTVEQLKNGKLD
ILVATDVAARGLDVERISHVINYDIPIDTESYVHRIGRTGRAGRSGAAISFVTPRERHLL
NAIERATRQPLTQMQLPSVEDVNSTRLTRFDDAITAALGETARIAAFRDIVGHYVEHHDV
PEADVAAALAVVAQGETPLLLNADDVRAAARFDRERTEHRDRDRGDRPVRERRDDRGSRD
DRGSRDDRPLRSERPERRSRDSNRAMASFRIEVGKRHKVEPRQIVGALANEGGLSREDFG
AIQILPEYSLVDLPADLSGDVLGRLSATRISGKLIEIHADNGASAGRNDRPQQGDRSERP
PRRY
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
gtgggagaatccttccagacgagggccgttcccggctcgagcacccggctcacggcggac
ggagagaaatttccgagcggatcggcccaaaaccaggcaaaatggccgcacacgaacggg
gggctcagcccgaccgactaccgtagtagtatgacgcctcctgattcaactgcaccgacc
gaggcagacactgcccgcgcgacgatcaccttctccgagcttgggctcagcgactccgtt
ctcaaggccctgaaggacgtcggctacgaaaccccgtcggccatccaggccgcaaccatt
cccccgctgctcgacggccgcgacgtcgtgggcctggcccagacgggcaccggcaagacg
gccgccttcgcgctgccgatcctctcccgcctcgacctgtcccagaagagcccgcaggcc
ctggtgctcgcgcccacccgcgagctcgccctgcaggtctgcgaggcgttcgagaagtac
gccgcccacatgaagggcgtgcacgtgctgcccgtctacggcggacagggttacggcatc
cagctgtctgcgctgcgtcgcggcgtgcacgttgtcgtcggtacgcccggccgcatcatg
gaccacctcgaaaagggcaccctcgacctcacccagctcaagtacctggtcctcgacgag
gccgacgagatgctcaagatgggcttcgccgaggacgtcgagacgatcctcgccgacacc
ccggacgacaagcaggtggcgctgttctcggccaccatgccggccgcgatccgccgcatc
tccaagcagtacctcaacgaccccgaagagatcacggtcaagaacaagaccacgacctcg
gcgaacaccacccagcgttacctgctggtctcctacccgcagaaggtcgacgcgctcacc
cgcatcctcgaggtcgagaacttcgagggcatgatcgtcttcacccgcaccaagaacgag
accgagaccctcgccgagaagctgcgcgcgcgcggctactccgccacggccatcaacggc
gacgtgccccaggtgcagcgtgagcgcacggtggagcagctcaagaacggcaagctcgac
attcttgtcgccacggatgttgccgcccgcggtctggatgtggagcgcatcagccacgtc
atcaactacgacatcccgatcgacaccgagtcgtacgtgcaccgcatcggccgcacgggc
cgggccggccgcagcggcgccgcgatcagcttcgtaactccgcgcgagcgccacctgctc
aacgccatcgagcgggccacccgccagccgctcacccagatgcagctgccgagcgtggag
gacgtcaactccacccgcctcacccgcttcgacgacgccatcacggcggcgctgggcgag
actgcgcgcatcgccgcgttccgcgacatcgtgggccactacgtggagcaccacgacgtg
ccggaggccgatgtggccgccgccctcgccgtggtcgcccagggcgagacccccctgctg
ctcaacgccgacgacgtgcgggctgcggcccgtttcgaccgggagcgcaccgaacaccgc
gaccgcgaccgcggcgaccgccccgtgcgcgagcgccgcgacgaccgtggcagccgggac
gaccgcggtagccgcgacgaccgtccgctgcgcagcgagcgccccgagcgccgttcacgc
gacagcaaccgggccatggcctcgttccgcatcgaggtgggcaagcgccacaaggtcgag
ccgcgccagatcgtcggtgcgctggccaacgagggcggcctgagccgcgaggacttcggc
gcgatccagatcctgcccgagtactccctggtggatctgcccgccgacctgtccggcgac
gtgctgggccgcctctcggcgacccgcatcagcggcaagctcatcgagatccacgccgac
aacggcgcctcggccggccgcaacgaccgcccgcagcagggcgaccgctccgagcgcccg
ccgcgccgctactaa
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