Chimaeribacter arupi: P0E69_02860
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Entry
P0E69_02860 CDS
T09246
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
caru
Chimaeribacter arupi
Pathway
caru02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
caru00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
P0E69_02860 (pdeR)
Enzymes [BR:
caru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
P0E69_02860 (pdeR)
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
WKZ92909
LinkDB
All DBs
Position
complement(612063..614057)
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AA seq
664 aa
AA seq
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MIENQDGSILYQHFGTPRPYWRLHADSNALELSAEKNMTNVAIALTGYQAMTIRELTGVT
ASFSLDISLYGTPLRLHLVGRRIGPKEWGGTASDYYDTPSVAHDLEVGLSFAEQVVSEAN
SVIVIVDQEGKVQRFNRLSEEYTGVKEKDVIGKSAYDLFMSLEEGTASRQNITGFFQTAQ
SYEVERWINTVKGQRLFLFRNKFVHSGSGKQQTFLICSGTDITDERMAQERLRILANTDT
ITGLANRHAIMEKMNAALADRGDTAVGVIYLDLDNFKKVNDAYGHMFGDRLLQEVATSIQ
ECLGPRDTLARLGGDEFIILSENTSLEALEACAVQIHSRLKTPFRIGLIEVYTGCSCGLA
LCPEHGTNAESLIRNADTAMYVAKDQGRRTHRVFSPEMNYKVAEYMWLDTNLRKALDEQQ
LLLYYQPKVSAGTGRVESVEALVRWYSPERGLIAPAQFIPYAEESGLIGPLGKWVMETAA
NQAMAWQQKGLNLRIAVNLSARQLSSDTLIPTFKEAMASSGMTQCLLDVELTESCLIEDE
STAVSLIGQLQALGADVYLDDFGTGYSSLSQLARIPIDYIKLDQSFVRGISNNDVSQALV
RAIIAVARTLNLKVVAEGVETENEERFVDEMGVDDKQGYFYAKPMPAEELEHWLSNNDVL
HPSK
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaaaatcaagatggttcgatcctgtaccaacattttggtaccccccgcccctat
tggcgactccatgcggacagcaacgcgctggaactctctgcggaaaaaaatatgaccaac
gtcgccattgccctcaccggctaccaggcgatgaccatccgggaactgaccggcgtcacg
gccagtttctcccttgatatttcactgtatggaacaccattgcgcctgcatctggttggc
cgccgcataggccctaaagagtggggcggtactgcgtccgactactatgacaccccttcc
gtcgcgcatgatctggaggtcggcttatcctttgccgagcaggtcgtgtctgaagcgaat
tcggtgattgttatcgttgatcaggaaggaaaagttcagcgctttaaccgcctgagtgaa
gaatacaccggcgtcaaagagaaagatgtcatcggcaaaagtgcctatgacctgtttatg
tcactcgaggagggcaccgcctcccgccagaacattaccggctttttccagacggcccaa
tcctacgaagtcgaacgctggatcaataccgtcaaaggccagcggctgtttctgttccgc
aataagtttgtgcacagcggcagcggcaagcagcaaacgttcctgatctgttccggcacc
gacatcaccgatgagcggatggcgcaggagcggctgcgtattctggccaacactgacacc
atcaccggcctcgccaatcgccacgccatcatggaaaaaatgaacgccgcgctggccgac
cgcggcgacaccgccgtgggggtgatctacctggatttagataattttaagaaagtgaat
gatgcctacgggcatatgtttggcgatcgcctgttgcaggaggtcgcgacgtccatccag
gagtgcctcggcccgcgggatacgctggcccggctgggtggggatgaatttatcatcctc
agcgaaaataccagcctggaagcgctggaagcctgcgccgtgcagatccacagccgcctg
aaaacgcccttccgcatcggcctgattgaagtctataccggctgctcttgtggccttgcc
ctttgccctgagcacggcaccaacgccgagagcctgatccggaacgcggacaccgcgatg
tatgtcgccaaagatcaggggcggcgcacacaccgggttttctccccggagatgaattac
aaagtggccgagtacatgtggctggacaccaacctgcgcaaagcactggatgagcagcag
cttctcctctattaccagccgaaagtctccgccggcaccggccgggtggagagcgtcgag
gcgctggtgcgctggtattcgccggaacgcgggttgattgcgcctgcccagtttatcccg
tatgccgaggagtccgggcttatcggccccctgggtaaatgggtgatggaaaccgcagcc
aatcaggcgatggcctggcaacagaaagggctgaacctgcgtatcgccgtgaatctgtcc
gcgcggcagctcagcagtgacacgctgatccccacgttcaaagaggcgatggcctcctcg
ggtatgacacagtgcctgctggatgtggagctgaccgaaagctgcctgatcgaagatgag
agcacggcggtgtcgttgatcggccagttgcaggcgctgggtgccgacgtctacctggac
gatttcggtaccggctactcttccctctcccaactggcgcgcatcccgatcgactacatc
aagctcgatcagagttttgtacgcggcatcagcaataacgacgtttcacaggcactggta
cgggcaatcatcgccgttgccagaacgctgaacctgaaagtggtggcggaaggcgtagag
actgaaaacgaggagcgtttcgtcgatgagatgggcgtggatgacaaacagggttacttc
tatgcgaagccaatgcccgcagaggagctggagcattggctgtcgaacaatgatgtgctt
cacccatcaaagtaa
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