Chimaeribacter arupi: P0E69_18475
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Entry
P0E69_18475 CDS
T09246
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
caru
Chimaeribacter arupi
Pathway
caru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
caru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
P0E69_18475 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caru03021
]
P0E69_18475 (rpoC)
03400 DNA repair and recombination proteins [BR:
caru03400
]
P0E69_18475 (rpoC)
Enzymes [BR:
caru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
P0E69_18475 (rpoC)
Transcription machinery [BR:
caru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
P0E69_18475 (rpoC)
DNA repair and recombination proteins [BR:
caru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
P0E69_18475 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
WKZ92124
LinkDB
All DBs
Position
complement(4029949..4034169)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEAECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEDVKNTEGEWETKTSIVDTTIGRAILWMIVPNGLPFSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKAEIIEEAETE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSVEDVVNRDGEVEQQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVPRNTLLNEKTCDLLEENSVDAVKVRSVVGCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSLKL
SNAKHVTNSNGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGQEVNAGETVANW
DPHTMPVISEVSGFIRFADMVDTQTITRQTDDLTGLSSIVVLDSAERTGSGKDLRPALKI
VTANGDDVLIPGTDMPAQYFLPGKAIVQLEDGVEINAGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPLDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKGTIASAGSSEFLEGEQAEVSRVKIANRQLEADGKIAATYHRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAQNEEPV
VPQVSAEEATANLAELLNAGLGGNDE
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattgaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcatcgccggacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaacgatcaactaccgtacgttcaaacctgagcgtgacggccttttctgtgcccgt
atctttgggccggttaaagattacgaatgcctgtgcggtaagtacaagcgtttaaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacccagactaaagtgcgccgtgag
cgtatgggtcacatcgagctggcctctccgactgcccacatctggttcctgaaatcgctg
ccgtcccgcatcggtttgctgctggatatgccgctgcgtgacatcgagcgcgtgctttac
ttcgaatcctacgtggtggttgaaggtggcatgaccaaccttgagcgccgtcagatcctg
actgaagagcagtatctggacgcgctggaagagtttggtgacgaattcgacgcgaagatg
ggtgcagaagcgatccaggccctgttgaaaaacatggatctggaagcagagtgcgagcag
ctgcgtgaagagctgaacgaaaccaactctgaaaccaagcgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgtacagtccggtaacaagccggagtggatgatcctgacc
gtgctgccggtactgccgccggatctgcgtccgctggttccattggatggcggccgtttt
gcaacgtctgatctgaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctgaaa
cgcctgctggatctggctgcgcctgacatcatcgtgcgcaacgaaaagcgtatgctgcaa
gaagcggtagacgccctgctggacaacggccgtcgcggtcgcgccatcaccggctcgaac
aagcgtccgctgaagtccctggcagacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctgctgggtaaacgtgtcgactactctggtcgttccgttatcaccgtaggtccgtac
ctgcgtctgcatcagtgcggcctgccgaagaaaatggcgctggaactgttcaagccgttc
atctatggcaagctggaactgcgtggcctcgcgaccaccattaaagccgccaagaaaatg
gttgagcgcgaagaagccgtggtctgggacatcctggatgaagttatccgtgagcacccg
gtcctgctgaaccgtgcaccgacgctgcaccgtctgggtatccaggcgtttgagccggta
ctgattgaaggtaaagcgatccagctgcacccgctggtttgtgcggcatacaacgccgac
ttcgacggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtccaccaacaacattctgtctccggcgaacggcgagccaatcatc
gttccgtctcaggacgttgtactgggcctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtactgacagggccgaaagaagctgagcgtatttaccgcgccggc
ctggcatccctgcatgcacgcgtcaaagtgcgtatcactgaagatgtgaagaacaccgaa
ggcgagtgggaaaccaagacctccatcgtggacaccacgatcggtcgtgcaatcctgtgg
atgatcgtaccgaacggcctgccgttctctatcgtcaaccagccgctgggcaagaaagcg
atctccaaaatgctgaacacctgttaccgcattttgggcctgaagccgactgttatcttc
gctgaccagattatgtacaccggttttgcctacgcggcacgttctggtgcgtctgttggt
atcgacgacatggtgattccggagaagaaagccgagatcatcgaagaagccgaaaccgaa
gtggccgagatccaggagcagttccagtctggtctggttaccgcgggcgaacgctacaac
aaagtgatcgatatctgggctgccgccaacgaacgcgttgcaaaagcgatgatggaaaac
ctgtctgttgaagacgtggttaaccgtgacggcgaagttgagcaacaagtctcgttcaac
agcatctttatgatggccgactccggtgcgcgtggttctgccgcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgtcgtctg
gttgacgtggcgcaggacctggtggtgaccgaagacgattgtggtacccacgaaggtatc
atgatgaccccggttatcgagggtggcgatgttaaagagccgctgcgtgagcgtgtactg
ggccgtgtaacggcagaagacgtgctgaagccgggtacggcggacattctggttccgcgt
aacaccctgctgaacgagaagacgtgtgatctgttagaagagaactctgtcgacgccgtg
aaagtacgctctgtagtaggttgtgaaaccgactttggtgtgtgtgcaaactgctacggt
cgcgacctggcacgtggccacatcatcaacaaaggtgaagcagtcggtgttattgcagca
cagtccatcggtgagccgggtacccagctgacgatgcgtacgttccacattggtggtgcg
gcatctcgtgcggcagcagagtccagcattcaggttaagaacaaaggtagcctgaagctg
agcaacgcgaaacacgtgaccaactctaacggtaaactggttatcacctcgcgtaatacc
gagctgaaactgatcgacgaattcggtcgtaccaaagagagctataaagtgccttacggc
tcggtcatggcgaaaggtgatggtcaggaagttaacgcgggcgaaaccgtggctaactgg
gatccgcacaccatgccggttatcagtgaagtgagtggtttcatccgctttgctgatatg
gtcgacacccagaccattacccgtcagacagatgaccttaccggtctgtcgtctatcgtg
gtactggacagcgcagaacgtaccggtagcggtaaagatctgcgtccggcactgaaaatc
gtaaccgccaacggcgatgacgttctgattccaggcactgatatgcctgctcagtacttc
ctgccgggtaaagcgattgttcagctggaagacggtgttgagatcaacgcaggtgatacc
ctggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgt
gttgctgacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
gggattatctccttcggtaaagagaccaaaggcaagcgtcgcctggtgatcacgccgctg
gacggcagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgtttgaa
ggtgaacgtgtagagcgcggtgacgttgtgtctgacggcccggaatctccgcacgacatc
ctccgcctgcgtggtgttcacgcggtgacccgttacatcgttaacgaagtgcaggacgtt
taccgtctgcaaggcgttaagattaacgataagcacattgaggttatcgttcgtcagatg
ctgcgtaaaggcaccattgccagcgcaggcagctctgagttcctggaaggcgagcaggct
gaagtgtctcgcgtcaagattgccaaccgtcagctggaagctgatggcaagatcgcagca
acgtaccatcgtgacctgctgggtatcaccaaggcatctctggcgactgagtccttcatc
tctgcggcatcgttccaggaaacgacgcgtgttcttacggaagcggctgttgccggtaaa
cgtgatgaactgcgcggcctgaaagaaaacgtcatcgtgggccgtctgatcccagccggt
accggttacgcttaccatcaggatcgtatgcgtcgtcgtgcacagaatgaagaaccagtg
gttcctcaggtgagcgcggaagaagccacagccaacctggctgagctgctgaacgccggt
ctgggtggcaacgacgagtaa
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integrated database retrieval system
