Clostridium asparagiforme: NQ535_02350
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Entry
NQ535_02350 CDS
T08571
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
casp
Clostridium asparagiforme
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
casp03009
]
NQ535_02350 (rlmD)
Enzymes [BR:
casp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
NQ535_02350 (rlmD)
Ribosome biogenesis [BR:
casp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NQ535_02350 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Methyltransf_15
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
PrmA
Methyltransf_11
PCMT
Methyltransf_12
Methyltransf_4
UPF0020
Ubie_methyltran
FtsJ
Methyltransf_32
N6_Mtase
TPMT
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
UWO77139
LinkDB
All DBs
Position
530748..532211
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AA seq
487 aa
AA seq
DB search
MKKNDEFVVAIEDMSEDGAGIGRVDGYIWFIKDTVIGDVVRAGVMKMKKTYGFARLIEVV
EPSKDRVEPRCPVARQCGGCQLQMMDYEAQLRFKERKIYNNLKRIGGMENLRLPGEECGS
EDEGAGTGERAGADGRKIVRMEPIMGMEEPWRYRNKAQFPFGMSKDGRVITGFYAGRTHS
IIENEDCLLGVEENREILRIVREFMEEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMVCL
VVNGRKLPKDEVLVERLRQVDGMTSISLCVNTEKTNVILGDEVVNLWGPGYITDYIGDVK
YQISPLSFYQVNPAQTVKLYGTALEYAGLTGEETVWDLYCGIGTISLFLAQKAKKVYGVE
IVPQAIEDARRNAKINGIENVEFFVGKAEEVLPREFEEKQIYADVIVVDPPRKGCDEVCL
DTIVKMGPKRVVYVSCDSATLGRDVKYLGERGFVVERVRGCDMFGGSGHVETVIMMQNCG
MVRKSRG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagaatgacgagtttgtggtggcgattgaggatatgagcgaggacggcgcgggg
attggccgggtggacggatatatctggtttattaaagataccgtgattggggacgtggtg
agggcgggggtcatgaagatgaaaaagacctatggctttgcgcggctgatcgaggtggtg
gaaccgtcaaaagatcgcgtggagcccaggtgtccggtggcgcggcagtgcgggggctgc
cagctgcagatgatggattatgaggcgcagctaaggtttaaggagcggaagatttataat
aatttgaaacggattggggggatggagaatttgaggctgccgggggaggaatgcgggagc
gaggatgaaggggctgggacgggcgaaagggccggagcggatggccggaagatcgtgcgg
atggagccgattatggggatggaggagccgtggcggtaccggaataaggcgcagttccca
tttgggatgagtaaggatgggagagtgattaccgggttttatgccggacggacccattct
ataattgaaaatgaggattgtctgctgggggtggaggagaatcgggaaatattacggata
gtccgggagtttatggaggaatttggggtgaagccctatgatgaggaagggcatcggggg
ctggtgcggcattgtctgattcggaaggggtttgccaccggggagattatggtatgtctg
gtggtgaacgggaggaagctgccgaaggatgaggttctggtggaacggctgcggcaggtg
gacgggatgaccagtatttcgctctgcgtgaatacggagaaaaccaatgtgattctcggg
gatgaggtggtgaatctctgggggccgggttatattacggattatatcggggatgtgaag
tatcagatttcaccgctgtcgttttatcaggtgaatccggcgcagactgtgaaattgtat
gggacggcgctggagtatgcgggattgacgggggaggagacggtctgggatttgtattgt
gggatcgggacgatttcgttgtttctggcgcagaaggcgaaaaaggtttatggggtggag
attgtgccacaggccattgaggacgccaggcggaacgcaaagattaatgggattgagaac
gtggagttttttgtggggaaggcggaggaagtgctgccgagggagtttgaggagaagcag
atttatgcggatgtgatcgtggtggacccgcctaggaaggggtgcgacgaggtttgtctg
gatacgattgtgaagatggggccgaaacgggtggtgtatgtgagctgtgattcggcgacg
ttggggagagatgtgaagtatttgggggagagagggtttgtggtggagagggttagaggg
tgtgatatgtttggggggagtgggcatgtggagacggtaataatgatgcaaaattgtggc
atggtaagaaaaagtaggggatag
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