Clostridium asparagiforme: NQ535_04505
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Entry
NQ535_04505 CDS
T08571
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NQ535_04505 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
casp03021
]
NQ535_04505 (rpoC)
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_04505 (rpoC)
Enzymes [BR:
casp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NQ535_04505 (rpoC)
Transcription machinery [BR:
casp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NQ535_04505 (rpoC)
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NQ535_04505 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
UWO77555
LinkDB
All DBs
Position
944380..948108
Genome browser
AA seq
1242 aa
AA seq
DB search
MPETNETYHPMTFDAIKIGLASPDKILEWSHGEVKKPETINYRTLKPEKDGLFCERIFGP
SKDWECHCGKYKKIRYKGVICDRCGVEVTKASVRRERMGHIKLAAPVSHIWYFKGIPSRM
GLILDISPRTLEKVLYFASYIVLDPGSTSLQYKQVLSEKEYREEVEKYGGTGGFRVGMGA
EAVQELLRAIDLEKDSAELRKALNDATGQKRARIIKRLEVVEAFLNSGNRPEWMIMDVIP
VIPPDIRPMVQLDGGRFATSDLNDLYRRIINRNNRLARLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVSNGTAHNIKNAKKMVERLQSEVWDVLEDVIKEHPVML
NRAPTLHRLGIQAFEPILVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTQERPGAVGEGMVFKSVNEAILAYENKAAT
LHSRVKVRVSKTMPDGTVKTGIIDSTIGRFIFNEIIPQDLGFVDRSVPENELKLEVDFHV
AKKQLKQILEKVINVHGATQTAVTLDDIKAIGYKYSTRAAMTVSISDMTVPESKPKLIED
AQATVDRIAKNYRRGLITEEERYKEVIETWKNTDDQLTHDLLTGLDKYNNIYMMADSGAR
GSDKQIKQLAGMRGLMADTTGHTIELPIKSNFREGLDVLEYFISAHGARKGLSDTALRTA
DSGYLTRRLVDVSQDLIIREVDCCEGRDIPFMEIKSFMDGNEVIEELEERITGRYIAETI
TDPDTGEVVVKANHMVTPKRAAAVMKVLNKTGRKSVKIRTVLSCKSHIGVCAKCYGANMA
TGQPVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGGDITQGLPRVEELFEARKPKGL
AIITEFGGTVTIKDTKKKREITVTDEENNNSKTYLIPYGSRIKVMDGQVLEAGDELTEGS
VNPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHIEMIVHQMLKKVKLEESGDSDV
LPGVSMDVLDYNEMNEALIAEGKKPAEGKQVMLGITKASLATDSFLSAASFQETTKVLTE
AAINGKIDHLIGLKENVIIGKPIPAGTGMKRYRKVKLDTELIAEEEIVLSEDDELTVEEP
DENSAINEDNVAEEVLDIDDMEGADDEIALDEMDEAGDGSEA
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaactaatgaaacttatcatccgatgacatttgatgcgataaagattggcctg
gcctcccccgacaagattctggagtggtctcacggcgaggtgaaaaagccggagaccatc
aactacagaaccttaaagccggagaaggacggtctgttctgtgagcggatcttcggaccc
agcaaggactgggagtgtcattgtggtaaatacaagaagattcgttacaaaggtgttatc
tgcgaccgatgcggcgtagaggtgacgaaggcaagcgtgcgccgtgagcgcatgggccac
atcaagctggcggctcccgtgtcccatatctggtatttcaagggaattcccagccggatg
ggactgattctggatatttctcccagaaccctggagaaggtcctgtacttcgcttcctat
attgtgctggatcccggttccaccagcctgcagtataagcaggtgctctccgagaaggag
taccgggaagaggtggagaaatacggcggcaccggcggcttccgcgtgggaatgggcgcc
gaggcggttcaggaactgcttcgggccatcgacctggagaaggattccgctgagctgcgc
aaggcgttaaacgacgccaccggccagaagcgggcgcgtatcatcaagcgcctggaggtt
gtggaggcattcttaaactccggcaaccgtccggagtggatgatcatggacgtgatccca
gtgatcccgccggatatccgccccatggttcagctggacggcggccgtttcgccacctcc
gatctgaacgatctgtacagaagaattatcaaccgcaacaaccgtctggcaagactcctg
gagttaggcgctccggacatcatcgtccgcaatgagaagcgcatgctgcaggaagctgtg
gacgcgctgatcgataacggccgccgtggcagacccgtcaccggccccggaaaccgtgcg
ttaaagtccctctccgacatgttaaagggtaaacagggacgtttccgccagaaccttctg
ggcaagcgcgtggactattccggacgttccgttatcgtggttggacccgagcttaagatt
taccagtgcggacttcccaaggagatggccatcgagctgttcaagcccttcgtgatgaag
gagctggtgtccaacggaaccgctcacaatatcaaaaatgcaaagaagatggtggagcgc
ctgcagtccgaggtttgggatgtgctggaggacgtaatcaaagagcatccggttatgtta
aaccgcgctcctacgctgcacagactgggcatccaggcattcgagcccattctggtagag
ggtaaggccatcaagctgcatcccctggtttgtaccgcgttcaacgcagacttcgacggc
gaccagatggcggttcatctgcctctgtccgtggaggcccaggcggagtgccgtttcctg
ctgctgagccccaacaacctgttaaagccctccgacggcggccccgtggccgtgccgtcc
caggatatggttctgggtatctattacctgacccaggagcgtccgggagccgtgggcgag
ggtatggtgttcaagagcgtgaacgaagccatcctggcctatgagaataaagccgccacc
ctgcactccagggtcaaggtgcgcgtgagcaagaccatgcccgacggcaccgtaaagacc
ggaatcatcgattccaccatcggacgtttcattttcaatgagatcattccgcaggatctg
ggctttgtggaccgcagtgtgcctgagaacgagctgaagctggaagttgacttccacgtg
gcaaagaagcagttaaagcagattctggaaaaggtgatcaacgtccacggcgcgacccag
acggccgtgaccctggacgatatcaaggccatcggatacaagtattccacccgcgcggcc
atgaccgtttccatttccgatatgaccgtgccggagagcaaacccaagctgatcgaggac
gcccaggctaccgtggaccgcatcgcgaagaactaccgccgcggtctgatcaccgaggaa
gagcgctacaaagaggtgatcgagacctggaagaacacggatgaccagttgacccacgac
cttttgaccggcctggataagtacaacaacatctatatgatggcggactccggagcccgt
ggttccgataagcagatcaaacagctggccggcatgcgaggcctgatggccgatacgacg
ggtcacaccatcgagctgcccatcaagtccaacttccgtgaaggtctggacgtactggag
tacttcatctccgctcacggagcgcgtaaaggtctgtccgatacggctctgcgtaccgcc
gactcaggatacctgaccagacgtctggtagacgtttcccaggacctgatcatccgcgag
gtggactgctgcgaaggcagggatatccccttcatggagatcaagtccttcatggacggc
aacgaggtgatcgaggagctggaggagcgtatcaccggccgctatatcgccgagaccatc
accgatccggataccggcgaggttgtggtgaaggccaaccacatggtaacccccaagcgg
gcggccgccgtgatgaaagtgttaaacaagaccggacgcaagtccgttaagattcgtacc
gtgctgagctgtaagtcccacatcggcgtgtgcgccaagtgctacggagccaacatggcc
accggccagcccgtgcaggtcggcgaggcggtcggcatcatcgccgctcagtccatcggt
gagcccggaacccagctgaccatgcgtacgttccataccggcggcgtggccggcggcgat
atcacacagggtcttccccgtgtagaggagctgttcgaggcgcgtaagcccaagggcctg
gcgatcatcactgagtttggcggcaccgtgaccatcaaggacaccaagaagaagcgcgag
atcaccgtgaccgacgaggagaacaacaactccaagacctacctgatcccctacggatcc
agaatcaaggttatggacggacaggtgctggaggccggcgacgagctgaccgaaggtagc
gtgaacccccacgacattttgaagatcaagggcgtccgcgccgtgcaggattatatgatc
caggaagtacagcgcgtataccgtttacagggcgtggagatcaacgataagcatatcgag
atgatcgttcaccagatgttaaagaaggtgaagctggaggagagcggcgacagcgacgtg
ctgccgggcgtttccatggatgttctggattacaacgagatgaacgaggctctgatcgcg
gaaggcaagaagccagccgagggcaagcaggttatgctgggtatcaccaaggcatccctt
gcgacggattccttcctgtctgcggcgtccttccaggagaccaccaaggttctgaccgag
gcggccatcaacggtaagatcgaccatctgattggtctgaaggagaacgtcatcattggt
aagccgattccggccggtaccggcatgaagcgttaccgcaaggtgaagctggacaccgag
ctgatcgccgaggaggagatcgtgctctccgaggacgacgagctgacggtggaggaaccg
gatgagaacagcgccatcaacgaggacaacgtggcggaggaagtgctggatatcgacgat
atggaaggcgctgacgacgagatcgcgttggatgagatggatgaggctggggacggaagc
gaagcgtaa
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