Clostridium asparagiforme: NQ535_09445
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Entry
NQ535_09445 CDS
T08571
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ535_09445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
casp03019
]
NQ535_09445
03009 Ribosome biogenesis [BR:
casp03009
]
NQ535_09445
Enzymes [BR:
casp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NQ535_09445
Messenger RNA biogenesis [BR:
casp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NQ535_09445
Ribosome biogenesis [BR:
casp03009
]
Prokaryotic type
rRNA helicases
NQ535_09445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Hyccin
Cas3-like_C_2
AAA_19
CMS1
Motif
Other DBs
NCBI-ProteinID:
UWO78483
LinkDB
All DBs
Position
2021923..2023629
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AA seq
568 aa
AA seq
DB search
MEAMKFDTLQLDERILRAVTEMGFEEASPIQAQAIPVAMEGRDMIGQAQTGTGKTAAFGI
PLLQKVDPKVKKLQAIVLLPTRELAIQVAEEVRRLGKFMHGIKVLPIYGGQDIVKQIRSL
KDGTQVIIGTPGRVMDHMRRKTVKLDYVNTVVLDEADEMLNMGFLEDMETILSQLPEERQ
TLMFSATMPPAIAEIARKFQKEPVTVRVVKKELTVPKVTQYYYEVKPKNKVEVMCRLLDL
YAPKLSIVFCNTKKQVDELVQALQGRGYFAEGLHGDLKQMQRDRVMNSFRNGRTDILVAT
DVAARGIDVGDVEAVFNYDIPQDDEYYVHRIGRTGRAGREGKAFSLVVGREVYKLRDIQR
YCKTRIIPQAIPSLNDITEIKVEKILDQVEEVMNDSDLSKMVGIIEKKLMEEEYTSLDLA
AALLKMNMGEDSEDIIECSEPARSLDDLDRYGRDFNRGRGRTTGGNRSRRKGATDRAAID
YIVEGDGDDMARLFINIGKAQRVTPGDILGAVAGESGMPGRLVGSIDMYDGYTFVDVPVR
YADEVLKAMGHARIKGRNIHVEKANGRR
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaatgaaatttgatacgttacagttggatgagcggattctgcgggccgttacg
gagatgggctttgaggaggcctctcccatacaggcgcaggcgattccggtggcaatggag
ggcagggacatgatcggccaggcccagaccggcaccggcaagacggcggccttcggaatc
ccgctgctgcaaaaggtggaccccaaggtcaaaaagctgcaggcgattgtgctgctgccc
accagagagctggccatccaggtagcggaggaagtgcgcagacttggcaagtttatgcac
ggaataaaggttctgcccatctacggcggtcaggatatcgtaaaacagattcgttcctta
aaggacggcactcaggtgatcatcggcacccccggacgtgtgatggaccacatgcggcgc
aaaaccgtaaagctggactatgtgaataccgtggtgctggatgaggcggacgagatgctc
aacatgggctttctggaggatatggagaccattttgagccagctccccgaggagcgccag
accctgatgttctccgccaccatgcctccggccatcgcggagatcgcccggaagttccag
aaggagccggtgacggtccgcgtggtgaaaaaggagctgaccgttcccaaggtcacccag
tattactacgaggtgaagcccaagaacaaggtggaggtgatgtgccgtctgctggatctg
tacgctcccaagctgtccatcgtgttctgcaacaccaaaaagcaggtggatgagctggtg
caggcgcttcagggcagaggttatttcgcggagggacttcacggggatttgaagcagatg
cagcgcgaccgcgtgatgaacagcttccgcaacggccgcacggacattttggtggccact
gacgtggcggcccgcggcatcgacgtgggcgacgtggaggcggtgttcaattatgacatc
ccccaggacgacgagtattacgtgcaccgcatcggccgtacgggccgggccggacgggaa
ggtaaggccttcagcctggtggtgggccgcgaggtctacaagctgcgcgacatccagcgt
tactgcaagacccgcatcattcctcaggctattccgtccttaaacgacatcacggagatc
aaggtggagaagatcctggatcaggtcgaggaagtgatgaacgacagcgatttgagcaaa
atggtgggaatcattgagaagaagctgatggaggaggagtacacctccctggatctggcg
gcggctctcctgaaaatgaacatgggcgaggacagcgaggacatcatcgagtgttcggag
ccggcccgctccctggacgatctggaccgctacggcagggactttaaccggggccggggc
agaaccaccggcggaaaccgcagccgccgcaagggcgctacggaccgcgccgccatcgac
tacattgtggagggcgatggagacgacatggcccgcctgttcatcaacatcggcaaggcc
cagcgcgtgaccccgggcgatatcctgggcgcggtggccggagagtccggtatgccggga
cgcctggtgggcagcatcgacatgtacgacggttataccttcgtggatgtgccggtgcgc
tacgccgacgaggtgttaaaggccatgggccatgccagaatcaagggcagaaacatccat
gtggagaaggctaacgggagaagatag
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