Clostridium asparagiforme: NQ535_12140
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Entry
NQ535_12140 CDS
T08571
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03030
DNA replication
casp03430
Mismatch repair
casp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ535_12140
03430 Mismatch repair
NQ535_12140
03440 Homologous recombination
NQ535_12140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
casp03032
]
NQ535_12140
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_12140
Enzymes [BR:
casp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NQ535_12140
DNA replication proteins [BR:
casp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NQ535_12140
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NQ535_12140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
HHH_3
DUF6282
Motif
Other DBs
NCBI-ProteinID:
UWO78986
LinkDB
All DBs
Position
2624423..2627908
Genome browser
AA seq
1161 aa
AA seq
DB search
MAFTHLHVHTEYSLLDGSCKIRELVARAKELGMDSMAVTDHGVMYGVIDFYKAAREVGIK
PILGCEVYVAPGSRFDRENVNGEDRYYHLVLLAENDQGYQNLMKIVSKGFVDGFYYKPRV
DYELLETYHEGIIALSACLAGEVQRYLSRGMYEEAGRAALRYQDTFGKGNFFLELQDHGL
DAQKQVNQGLLRLSRDLGIDLVATNDVHYTYAEDEKAHDILLCIQTGKKVADENRMRYEG
GQYYCKSEEEMRALFPYALEAIENTHKIAQRCNVEIEFGVLKLPRFEVPEGFDSWTYLNH
LCMQGFNRHYPEDDGTLRERLDYELDVIRTMGYVDYFLIVWDFINYARSKGISVGPGRGS
AAGSIVSYSLGITNIDPIRYNLLFERFLNPERVSMPDIDVDFCYERRQEVIDYVVEKYGK
DQVVQIVTFGTLAAKGVVRDVGRVLDLPYALCDSIAKMIPNDLGMTLDKALVMNPDLKKA
YNEDETVHNLIDMSKRLEGLPRHTSMHAAGVVIGSRSIDEFVPLSRAADGTITTQFTMTT
IEELGLLKMDFLGLRTLTVIQNAVNMAQKNHHVSIDLDNIDYNDKKVLDSIGTGKTEGVF
QLESGGMKSFMKELKPGSLEDIIAGISLYRPGPMDFIPKYIKGKNDRSAITYDCPQMEPI
LGPTYGCIVYQEQVMQIVRDLAGYTMGRSDLVRRAMSKKKASVMEKERQNFVYGNEEEGV
KGCVNNGLEERTANHIYDEMTDFAKYAFNKSHAAAYAVVSYQTAYLKYYYPLEFMAALMS
SVMDNVTKFSEYILTCRQIMGIPILPPDINEGESGFSVSGNAIRYGLSAIKSVGKSVVDT
IIADREAGGPFRSMEDFVGRMTHKEVNKRTLENFIKSGALDTLPGTRKQKIAVMPVLLES
KARERKSVIEGQLSLFDIAGEEERDNFQITFPEVGEYTKEELLVFEKEILGVYISGHPLE
DYKDVWQKTVTANASDFIVDEEAGGARVTDGARVVIGGLVAGKTVKTTRTNQLMAFITLE
DLMGSVEVIIFPKDYEANRELFVEDAKLFIRGRVSIGDDPVGKLVLEQVVPFSKIPRELW
IQFADKEQYVSREKELLETLKTSEGPDRVVIYLGKERAKKMLPASWNVDAAGVLVEELSR
KLGEKNVKVVEKPLALQGKMH
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcatttacacatctgcacgtccatacggagtacagtttgctggacggttcctgtaag
atccgcgagctggtggccagggccaaggagctgggcatggacagcatggcggtcacggac
cacggcgtcatgtatggcgtgattgatttttataaggcggccagggaagtgggcatcaag
cccattttgggctgcgaggtgtacgtggcccccggctcccgttttgaccgggagaatgta
aacggcgaggaccgctactaccacctggtgctgctggctgagaacgaccagggctaccag
aacctgatgaagatcgtgtccaagggctttgtggacggtttttactacaagcccagggtg
gactatgaactgttggagacctaccacgaggggatcatcgccctgtccgcctgcctggcg
ggcgaggtgcagcgctacctctcccgggggatgtacgaggaggcgggccgggccgctctg
cgctaccaggacacctttggcaaggggaattttttcctggagcttcaggaccacggcctg
gacgcgcagaagcaggtgaaccagggcctgcttcgcttaagccgggatctgggcatcgac
ctggtggccaccaacgacgtccactatacctatgcggaggacgagaaggcccacgatatc
ctgctgtgcatccagaccggcaagaaggtggcggacgaaaaccgtatgcgctacgagggc
gggcagtattactgcaagtccgaggaggagatgcgcgccctgttcccctacgcccttgaa
gccattgagaacactcacaagatcgcccagcgctgcaatgtggagatcgagttcggggtg
ctcaagctgccaaggttcgaagtgcccgagggctttgactcctggacctacctaaaccac
ctgtgcatgcagggctttaaccgccattacccggaggacgacgggaccctgcgggagcgc
ctggactacgagctggacgtgatccgcaccatgggttatgtggactatttcctgattgtc
tgggactttatcaactacgccagatccaagggaatctccgtaggaccggggcgaggctcc
gcggccggcagtattgtcagctacagcctgggcatcaccaacatcgatcccatccgctac
aatctgctgttcgagcgtttcctgaacccggagcgcgtgtccatgcccgatatcgacgtg
gacttctgctatgagcggcggcaggaagtcatcgactatgtggtggaaaaatatggaaaa
gatcaggtggtgcagatcgtcaccttcggtaccctggcggccaagggcgtggtccgggac
gtgggccgggtgctggatctgccctacgcactctgcgattccatcgcgaaaatgatcccc
aatgatctgggcatgacgctggataaagcgctggtcatgaatcccgatctgaaaaaagcg
tataatgaagatgagacggtccacaacctgatcgacatgtccaagcgtctggagggactt
cccagacacacctccatgcacgcggcgggcgtggtgatcggcagccgttccatcgacgag
ttcgtgcccttgtccagggcggcggacggcaccatcaccacccagtttaccatgaccacc
atcgaggagctggggcttttaaaaatggactttctagggcttcggaccctgacggtgatc
cagaacgcggtgaacatggcccagaagaaccaccatgtgtccattgatctggacaacatc
gactacaacgacaaaaaggtattggattccatcggcacgggcaagaccgagggggtgttc
cagctggaaagcggcggaatgaagagcttcatgaaggagctgaagcccggcagcctggag
gatatcatcgccggaatttccctgtaccgcccgggtcccatggactttattcccaagtac
atcaagggcaagaacgacagaagcgccatcacttacgactgcccccagatggaacccatt
ctgggacccacctacggctgtatcgtctaccaggagcaggtgatgcagatcgtgcgggac
ctggcgggctacaccatgggccgctcggacctggtgcgccgtgccatgagcaagaaaaag
gcctcggtgatggagaaggagcgtcaaaatttcgtctacggcaatgaggaggagggcgtg
aagggctgcgtgaacaacggcctggaggaacgcacggccaaccacatctacgacgagatg
acggatttcgccaagtacgccttcaacaagtcccacgccgcggcctacgcggtggtttcc
taccagaccgcatacctgaaatattattatccgctggaattcatggcggcgctgatgagt
tcggtgatggacaacgtgaccaagttctccgagtacattctcacctgccgccagatcatg
ggaatccccatcctgcccccggacatcaacgagggggagagcggcttttccgtctcgggc
aacgccatccgctacggcctctccgccatcaagagcgtgggcaagtccgtggtggacacc
atcatcgccgaccgggaggcgggaggtcccttccggtccatggaggactttgtgggccgc
atgacccacaaggaggtcaacaagcggaccctggagaatttcatcaagtccggagcgctg
gacaccctgccgggcacccgcaagcagaagatcgccgtgatgccggtgctgctggagagc
aaggccagggagcgtaagtccgtgatcgagggacagcttagcctctttgatatcgccggg
gaggaggagcgggacaacttccagatcaccttcccggaggtgggagagtacaccaaggag
gaactgctggtatttgagaaggaaatcctgggcgtctacatcagcggccatcccctggag
gactataaggatgtgtggcagaagaccgtcacagccaatgcgtcggactttattgtggac
gaggaggcgggcggagccagggtgacggacggagccagggtggtgatcggcggcctggtg
gccggaaagacggtcaagaccacccgcaccaaccaactcatggccttcatcaccctggag
gatttgatgggttcggtggaggtgatcattttcccgaaagattacgaggccaaccgggag
ctgttcgtggaggacgccaagctgttcatccggggacgggtttccatcggggacgatccg
gtgggaaaactggtcttggagcaggtggtgcccttctccaaaatcccacgtgagctttgg
atccagttcgcggacaaggagcagtatgtgtcccgggagaaggagctgcttgaaacctta
aagaccagcgagggaccggaccgggtggtgatttacctgggaaaagagcgggcgaaaaag
atgctcccggcctcctggaacgttgatgcagcaggtgttctggtggaagagctttccaga
aaacttggtgaaaaaaatgtcaaagtcgtggaaaaaccacttgcattgcaggggaaaatg
cattag
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