Clostridium asparagiforme: NQ535_13715
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Entry
NQ535_13715 CDS
T08571
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
NQ535_13715
09124 Replication and repair
03420 Nucleotide excision repair
NQ535_13715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
casp03021
]
NQ535_13715
03036 Chromosome and associated proteins [BR:
casp03036
]
NQ535_13715
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_13715
Enzymes [BR:
casp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
NQ535_13715
Transcription machinery [BR:
casp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
NQ535_13715
Chromosome and associated proteins [BR:
casp03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
NQ535_13715
DNA repair and recombination proteins [BR:
casp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
NQ535_13715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UWO79285
LinkDB
All DBs
Position
2941505..2943994
Genome browser
AA seq
829 aa
AA seq
DB search
MEERSLSVIRISVRNLVEFVLRSGDLDNRRTAGAKKEAMQAGGRLHRKIQKRMGSEYRAE
VSLKHTVDEEEFKLLVEGRADGVIEEAAGCVIDEIKCIYMDLKYLEDADPVHLAQAKCYA
YFLACDRELAAMGVQITYCNIESEEVRRFRFDYSFEELEEWFLGLVHEYVKWARFQYLHG
LRRQQSLKDLQFPYAYRDGQKGLAAAVYRSIDQGRNLFIQAPTGVGKTLSTVFPSLKAMG
EGSGDKLFYLTAKSITRSVAEDAFRVMRDLQQLYFTTVTITAKEKLCVLDKPDCNPETCP
VAKGHYDRVNDAVYDILHEEMGITRELVLEYAKRHNVCPFEFCLDITNWADGIICDYNYV
FDPNVRLKRYFAEGSTPGEYLFLVDEAHNLVPRAREMFSAGLLKEDFLLVKRILKGKDGA
ERTVRQLERCNKELLNLKRAFAAEEGGEEGVRQRSVLGRDYQLLEDVNLLYLELSGLFSE
LEAFMNEHLEFGDRDLVLDFYFQVRDFLYVHDRLDDNYRIYSWLLEDGSFLVKLMCINPS
VNLRECLDQGRSTLFFSATLLPIQYYKELLSGDQSEYAVYANSPFDSENRLIVAASDVSS
IYRRRNRREYERVAGYIVEIVGARKGNYMVFCPSYQYLHAVEEVFVQLEERGELPFAWIS
QSSHMREEEREEFLARFARPGDGRSLAALCVMGGIFSEGIDLKEEQLIGAIVIGTGLPQV
NVEQEILREYFDEHGGQGFSYAYQYPGMNKVMQAAGRVIRTATDQGVIALLDDRFLKSDY
QALFPREWERYTVVNRRNVRRAVADFWEHLGNETPGAPKDDLRTDLQTP
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
gtggaggagagatcgctgtcagtcattcgaatatcggtgcgcaatctggtggagttcgtc
ctcaggagcggagacctggacaaccgccggaccgccggagccaagaaggaggccatgcag
gcgggcggacgcctgcaccgcaagattcagaagcgcatgggcagtgagtaccgggccgag
gtgagcttaaagcacaccgtggacgaggaggagtttaagcttctggtggaagggcgggcc
gacggcgtgatcgaggaggcggccggctgtgtgattgacgagatcaagtgcatttatatg
gatttaaaatacctggaggatgcggacccggtccacttggcccaggccaagtgctacgct
tacttcctggcctgcgaccgggagcttgccgccatgggcgtgcagatcacctactgcaac
atcgagtccgaggaggtgcggcggttccgcttcgactactcctttgaggagcttgaggag
tggtttctgggattggtccacgagtacgtgaagtgggccaggttccagtatctccacggg
ctcaggcggcagcagtccctgaaggatttgcagttcccctacgcctaccgggatggtcag
aaggggctggccgctgcggtttaccgcagcatcgaccagggacgaaacctgttcatccag
gcgcccaccggcgtgggcaagaccttgtccaccgtatttcccagcctcaaggcaatgggg
gaaggctcgggggataaattgttctatctgacggccaagagcatcacccgcagcgtggcc
gaggacgcctttcgggtgatgcgggatctgcagcagctctatttcaccaccgtgaccatc
acggcaaaggaaaagctgtgcgtcctggacaagccggactgcaacccggagacctgtccg
gtggccaaggggcactacgaccgggtgaacgacgcggtgtacgacattctccacgaggag
atggggatcacccgggagctggtgctggagtacgcaaagcgccacaacgtgtgtcccttt
gagttctgcctggatatcaccaactgggcggacggcatcatctgcgactacaattacgtg
ttcgaccccaatgtgcggctcaaacggtattttgccgaaggcagcacgccgggagagtac
ctgttcctggtggacgaggcccacaacctggtgccccgggccagggagatgttcagcgcc
ggcctgctgaaggaggattttctgctggtcaagcggattttaaagggcaaggacggagcg
gagcgcacggtgcgccagctggagcggtgcaataaggaactgttgaatttaaagcgggcc
tttgcggctgaggagggcggcgaggagggagtgcggcagcgctccgtgctgggaagggac
taccagcttctggaggacgtgaacctgctgtatctggagctgtccggtttgttcagcgag
ctggaagcctttatgaacgaacacctggaattcggggaccgggatctggtgctggacttc
tatttccaggtgcgggactttctctacgtccacgaccggctggacgataactaccggatc
tattcctggctgctggaggacggcagctttctggttaagctgatgtgcataaatccttcg
gtgaacctgcgggaatgcctggaccagggccgctccaccctgtttttctccgccaccctg
ctgccgatccagtattacaaggagctgctcagcggggaccagtcggagtacgcggtctac
gccaactcgccctttgattcggaaaaccgcctgattgtggccgcctccgacgtcagcagc
atctaccgccgcaggaaccgccgggaatacgagcgggtggccggttacatcgtggagatc
gtgggcgcgagaaaggggaattacatggtgttctgcccctcctaccagtacctccacgcc
gtggaggaggtgtttgtgcagctggaagagcggggggagcttccctttgcctggatctcc
cagtccagccacatgcgggaggaggagcgggaggaatttctggcgcggttcgccaggccg
ggcgacgggaggtccctggcggcgctctgcgtgatgggggggattttttccgagggaatc
gacttgaaagaagagcagctcatcggggccattgtgatcggcaccgggctgcctcaggtg
aacgtggagcaggagatcctgcgggaatatttcgacgagcacggcggccagggcttttcc
tacgcctaccagtacccgggcatgaacaaagtgatgcaggcggccggccgggtgatccgc
acggccacggaccagggcgtgatcgccctgttggacgaccgctttctgaaatccgactac
caggccctgtttcccagggagtgggagcgttacaccgtggttaaccggcgcaacgtgcgc
cgggcggtcgctgatttctgggaacatctgggaaatgaaacgcccggcgctccgaaagac
gatctgcgtaccgatctgcaaacgccctaa
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