Clostridium asparagiforme: NQ535_16485
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Entry
NQ535_16485 CDS
T08571
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
casp
Clostridium asparagiforme
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
casp03032
]
NQ535_16485 (topA)
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_16485 (topA)
Enzymes [BR:
casp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NQ535_16485 (topA)
DNA replication proteins [BR:
casp03032
]
Prokaryotic type
DNA Topoisomerases
NQ535_16485 (topA)
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NQ535_16485 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
Zn_ribbon_Top1
zf-tcix
DUF7340
Toprim_4
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
UWO74442
LinkDB
All DBs
Position
complement(3572112..3574199)
Genome browser
AA seq
695 aa
AA seq
DB search
MANHLVIVESPAKVKTIKKFLGSNYEVDASGGHVRDLPKSQLGFDAEHDYEPKYITIRGK
GDILAKLRKEVKKADKIYLATDPDREGEAISWHLMKALKLDEAKNKQVYRISFNEITKNA
VKASFKSPRDIDMHLVDAQQTRRMLDRMVGYRISPLLWKKVKRGLSAGRVQSVALRMICD
REDEINAFIPEEYWNLDAKLLLKGAKKPLTAKYYGSDNGKNGKTGIRSKEELDRILADLE
GCSYVVDEVKKGERIKKAPIPFTTSTMQQEASKALNFSTQKTMRLAQQLYEGVEVKGHGT
IGLITYLRTDSTRIAEEADATARAFIKEQYGEKYVIKNEQSKKNGGKIQDAHEAIRPTDI
ALTPTVVKESLQRDLFRLYQLIWKRFTASRMDNAVYETTSVKITAGGHSFTTAASRLLFD
GFMSVYVEADDEEEHNQALGNMEKGTKLKLEELLPSQHFTQPPAHYTEASLVKALEEQGI
GRPSTYAPTITTIIARRYVVKESKNLYVTEIGEVVNRIMKQMFPSIVDISFTANMESLLD
KVADGSVQWKTVVSNFYPDLDEAVTVAEKELETVTIADEVSDEVCELCGRQMVIKYGPHG
KFLACPGFPDCKNTKPYLEKIGVPCPKCGKEVVRKKTKKGRLYFGCEANPDCDFMSWQKP
STKKCPECGAYMVEKGNKLLCSNETCGYRTNLEQE
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaccatctggtaattgttgagtcaccggcaaaggtgaaaacaatcaaaaaattt
ctgggcagcaattatgaagtggacgcttccggcggacatgtcagggatctgcccaagagt
cagcttgggttcgatgcggaacacgattatgagccgaaatacatcaccatccggggcaag
ggtgatattctggcaaagctgcgcaaggaagtgaagaaggctgacaagatctatcttgca
acggaccctgaccgtgagggagaggcgatttcctggcatctgatgaaggctctcaagctg
gacgaggcgaagaacaagcaggtgtaccgcataagcttcaacgagatcaccaaaaacgcg
gtgaaggcttccttcaagagtccccgtgatattgacatgcacctggtggatgcccagcag
acacgcagaatgctggaccgcatggtgggataccggatcagcccactgctctggaaaaag
gtgaagcgggggttgagcgcgggccgcgtgcagtccgtggcgctgcgtatgatctgcgac
cgtgaggatgagatcaatgcgttcattcccgaggaatactggaatctggatgccaagctc
ctgttaaagggtgccaagaagccgctgaccgccaaatattacggcagcgacaatggaaag
aacggcaagacgggcatccgcagcaaggaggagctggatcggatcctggcggatctggag
ggctgctcctatgtggtggacgaggtgaaaaagggtgagcggatcaagaaagcccccatt
ccctttaccaccagtaccatgcagcaggaggcctccaaggctctcaacttctccacccag
aagaccatgcgcctggcccagcagctgtacgagggcgttgaggtgaagggccacggcacc
atcggtttgatcacttacctgcgtacggattccacccgtatcgccgaggaagcggacgcc
acagccagagcgttcatcaaagagcagtacggcgaaaagtatgtgatcaaaaacgagcag
tccaagaaaaatggcggcaagatccaggacgcccacgaggcgatccgccccacggacatt
gccctgacgcccactgtggtgaaggagtccctacagcgcgatctgttccgcttgtatcag
ttgatctggaagcgtttcaccgccagccgtatggacaacgctgtgtatgagaccacctcc
gtgaagatcacggcgggcggacacagcttcaccaccgcggcttcccgcctgcttttcgac
ggttttatgtcggtttacgttgaggcggacgacgaggaagagcacaaccaggctctgggc
aatatggaaaaaggtacgaagctgaagctggaggagctgcttcccagccagcatttcacc
cagccgcccgcgcattataccgaggcctccctggtaaaggctctggaggaacaggggatc
ggacgccccagtacctatgcccccacgatcaccaccatcattgccagacggtatgtggtc
aaggagagcaaaaatctgtacgttacggagatcggcgaggtggtaaaccgcattatgaag
cagatgttccccagcattgtggatatcagctttaccgccaacatggagtccctgctggat
aaagtggcggacggctctgtgcagtggaaaacggttgtgagtaatttctacccggatctg
gacgaggcggtgaccgttgcggagaaggagctggagaccgtgaccatcgcggatgaggtt
tccgacgaggtctgcgaactgtgcggacgccagatggtcatcaagtacggtccccacggg
aaattcctggcctgtcccggtttcccggactgcaagaacaccaaaccctatctggagaag
atcggcgttccctgtcccaagtgcggcaaggaagtggtgcgcaaaaagaccaagaaaggc
cgtctgtactttggctgcgaggccaacccggactgcgactttatgtcctggcagaagcct
tccaccaagaagtgcccggagtgcggcgcctacatggtggagaaggggaacaagcttctg
tgctccaatgagacctgcggataccgcacgaatctggagcaggaatag
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