Clostridium asparagiforme: NQ535_17680
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Entry
NQ535_17680 CDS
T08571
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
casp
Clostridium asparagiforme
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NQ535_17680 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
casp03021
]
NQ535_17680 (rpoD)
Transcription machinery [BR:
casp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NQ535_17680 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
DprA_WH
DUF7355
Motif
Other DBs
NCBI-ProteinID:
UWO74671
LinkDB
All DBs
Position
complement(3859631..3860752)
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AA seq
373 aa
AA seq
DB search
MDEKTVGLEEKLAGLLAEAKKKKNVLEYQEIMDFLGTPPPDADQLDRIFEFLDQNSVDVL
RVDGKDDLDPDLFLEEELEEEEEIDVEHIDLSVPEGISLQDPVRMYLKEIGKIPLLDMEA
EIRLARQMEEGDREAAKRLAESNLRLVVSIAKRYVGRGMQFLDLIQEGNLGLIKAVEKFD
YRKGYKFSTYATWWIRQAITRSIADQARTIRIPVHMVENINRLVRTSRQLLQELGREPTT
EEIAARAEMSVERVSEILKMSQEPVSLETPIGEEEDSHLGDFIQDDNVTVPQDAATYTLL
HEQLMEVLTTLTEREQKVLRLRFGLDDGRPRTLEEVGREFKVTRERIRQIEAKALRKLRH
PSRSKKLKDYLDE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaagaccgttggactcgaggaaaagctggcaggattgctggcggaggcaaag
aaaaagaaaaacgtgctggagtaccaggaaatcatggactttttaggcacgccgcctccg
gacgcggaccagcttgaccggatttttgaatttctggatcagaacagtgtggacgtgctc
cgggtggacggaaaggacgatctggatccggaccttttcctggaggaagagctggaggag
gaagaggagatcgatgtggagcacatcgacctctcggtgcccgagggcataagcctgcag
gacccggtccgcatgtatttaaaagagatcggtaagattccgctgttggacatggaggcg
gagatccggctggccaggcagatggaggaaggcgatcgggaggcggccaaacgcctggcg
gagtcgaacctgcgcctggtggtgagcatcgccaagcgctatgtgggcagagggatgcag
tttctggacctgatccaggagggcaacctggggttaatcaaggcggtggagaaattcgac
taccgcaagggatacaaattcagcacctacgccacctggtggatccggcaggccatcacc
cgctccatcgcggaccaggcccgcaccatccgcataccggtgcacatggtggagaatatc
aaccgcctggtgcgcacctcccgccagctgcttcaggaactggggagagaacctaccacc
gaggagattgcggcccgggcggagatgtccgtggagcgggtttccgagattctcaaaatg
tcccaggagccggtttccctggaaacgcccatcggcgaggaggaggacagccatctgggg
gattttattcaggacgacaacgtcaccgtaccccaggacgcggccacttacacgctgctg
cacgagcagctgatggaggttttgaccaccctgaccgagcgggagcagaaggtgctgcgc
ctgcggttcggcctggacgacggccggccgcggactctggaggaggtgggacgggagttt
aaggtcacccgggagcggatccggcagatcgaggccaaggcgctgcgcaagctgcgccac
cccagcagaagtaaaaagttaaaggattatctggatgaatag
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