Clostridium asparagiforme: NQ535_19220
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Entry
NQ535_19220 CDS
T08571
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ535_19220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
casp03019
]
NQ535_19220
03016 Transfer RNA biogenesis [BR:
casp03016
]
NQ535_19220
Enzymes [BR:
casp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NQ535_19220
Messenger RNA biogenesis [BR:
casp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NQ535_19220
Transfer RNA biogenesis [BR:
casp03016
]
Prokaryotic type
tRNA degradation factors
NQ535_19220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_KhpA-B
KH-I_KHDC4-BBP
CvfB_2nd
KH_N4BP1_2nd
OB_RRP5_4th
DUF1654
KH_2
Motif
Other DBs
NCBI-ProteinID:
UWO74954
LinkDB
All DBs
Position
complement(4231533..4233641)
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AA seq
702 aa
AA seq
DB search
MFKSYSMDLAGRKLTVEVGRVAAQANGAVFMHYGDTVVLSTATASTKPREGIDFFPLSVE
FEEKLYAVGKIPGGFNKREGKASENAVLTARVIDRPMRPLFPKDYRNDVTLDNIVMSVDP
NCSPELTAMLGSAIATSISDIPFAGPCATTQVGMIDGEFIINPTADQKHVSDLALTVAST
REKVIMIEAGANEVPEDKMIEAIFKADQVNKEIIAFIDTIVAECGKEKHTYESCAIPEEL
FAAIKELVPPAEMEEAVFTDDKQTREGNIRAISERLEEAFAENEEWLGLIDEAVYQYQKK
TVRKMILKDHKRPDGRAVTEIRRLAAEVDLLPRVHGSGMFTRGQTQILNACTLAPLSEAQ
RLDGLDENETSKRYMHHYNFPSFSVGETKPSRGPGRREIGHGALAERALVPVLPSEEEFP
YAIRTVSETMESNGSTSQASICASTLSLMAAGVPIKDMVAGISCGLVTGETDDDYLVLTD
IQGLEDFFGDMDFKVAGTKKGITAIQMDIKIHGLTRPIIEEAISRTREARIHILDDVMRP
VISEPRKHLSPYAPKIIQINIDPQKIGDVVGKQGKVINKIIEETGVKIDINDDGSVNVCG
TDEAMINRAVQIIKSIVTEIEPGMIFTGKVVRLMNFGAFVELAPGKDGMIHISKLSEKRV
NTVEDVVNIGDEVTVKVIEVDKMGRINLSMKPSDLAPKKESK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaagttacagtatggacctggcagggcgcaagctgaccgttgaggtaggcaga
gtggctgcccaggcaaacggcgccgttttcatgcactatggcgacacagtggtactgtcc
accgcaaccgcatccaccaaacccagagagggcatcgatttcttccccctgagcgtggag
ttcgaggagaagctttacgctgtgggtaagatccccggcggcttcaacaagagagaggga
aaggcttccgagaacgcagtgctgaccgcccgcgtgatcgaccgccccatgcgtcccctg
ttccccaaggattaccgcaacgacgtgacgctggacaacatcgtgatgtccgtggacccc
aactgcagccctgagctgaccgctatgctgggttccgccatcgcaacgtccatttccgat
atccccttcgccggtccctgcgccaccacccaggttggcatgatcgacggcgagttcatc
atcaaccccacagcggaccagaagcatgtgagcgatctggccctgaccgtggcctccacc
cgggagaaggtgatcatgatcgaggccggtgccaacgaggttccggaggacaagatgatc
gaagccattttcaaggctgaccaggtcaacaaggagatcatcgcattcatcgacaccatc
gtggccgagtgcggcaaggaaaagcacacctacgagagctgcgcgattccggaagagctg
ttcgcagccatcaaagagctggttcctccggcagagatggaggaagcggtatttaccgac
gacaagcagacccgcgagggcaatatccgcgcgatcagcgagcgccttgaggaggcattt
gccgagaacgaggagtggctgggtctgatcgacgaagcggtttaccagtaccagaaaaag
accgtccgcaagatgatcttaaaggaccacaagcgtcccgacggccgcgcggttaccgag
atccgccgcctggccgcagaagtggacctgctgcccagagtgcacggctccggtatgttc
acccgcggacagactcagattttaaacgcctgcaccctggctcccctgtccgaggcacag
cgcctggacggactggatgagaacgagaccagcaagcgctatatgcaccactacaatttc
ccgtccttctccgttggcgagaccaagcccagcagaggaccgggccgccgcgagatcggc
catggcgctttagcggagcgcgcgctggtgccggtgcttccctccgaggaagagttcccc
tacgccatccgcaccgtgtctgagaccatggagtccaacggctccacctcccaggccagc
atctgtgcctccactctgtccctgatggccgccggcgtgccgatcaaggatatggtggcc
ggaatctcctgcggtctggtgaccggcgagaccgacgacgattacctggttctgaccgat
atccagggtctggaagatttcttcggcgacatggacttcaaggtggcaggtaccaagaag
ggtatcaccgccattcagatggatatcaagatccacggcctgacccggccgatcatcgag
gaggctatctccaggaccagagaggccagaatccacattctggacgatgtgatgcgcccg
gtgatctccgagcccagaaagcacttaagcccctacgcccccaagattatccagatcaac
atcgatcctcagaagatcggcgatgtggtcggcaagcagggtaaggtgatcaacaagatc
atcgaggagaccggcgtgaagatcgacatcaacgacgacggctccgtgaacgtctgcggt
accgacgaggcgatgatcaaccgcgcggttcagattatcaagagcattgtgaccgagatc
gagcccggcatgatctttaccggcaaggtggtacgtctgatgaactttggcgcatttgtg
gagctggctcctggcaaggacggcatgatccatatttccaagctgtccgagaagcgcgtg
aacacggtcgaggacgtggtcaacattggcgacgaggttacggttaaggtaatcgaggtc
gacaagatgggcagaatcaacctgagcatgaagcccagcgacctggctcccaagaaggag
tccaagtaa
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