Clostridium asparagiforme: NQ535_20380
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Entry
NQ535_20380 CDS
T08571
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03030
DNA replication
casp03430
Mismatch repair
casp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NQ535_20380 (holA)
03430 Mismatch repair
NQ535_20380 (holA)
03440 Homologous recombination
NQ535_20380 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
casp03032
]
NQ535_20380 (holA)
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_20380 (holA)
Enzymes [BR:
casp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NQ535_20380 (holA)
DNA replication proteins [BR:
casp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NQ535_20380 (holA)
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NQ535_20380 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
DNA_pol3_delta2
Phage_XkdX
Motif
Other DBs
NCBI-ProteinID:
UWO75172
LinkDB
All DBs
Position
complement(4491894..4492871)
Genome browser
AA seq
325 aa
AA seq
DB search
MQTLNQDIKDRSFKSAYLLFGDEAFLKKSYKNRLKEAVTGGDTMNYNYYEGKGINVPEIL
GMADTMPFFAEKRLILVEDSGFFKGGGEAESLAEYLPNVPDTTCLLFVETEVDKRSKLYK
AVKKYGYAAEMVRQEPAQLARWAAGVLAREGKKITGRTMDLFLSKTGDDMENILSELDKL
ISYTLGRDVITDADVEAVCVTQVTNKIFDMITAISSRQTRKAMDLYEDLLTLKEPPMRIL
FLIARQFNQILQVKELMGKGMDKSTIASKLKLAPFVAGKIMLQAKSFTKEQIFSYVNLCV
DAEEAVKTGKLADRLAVELLIANHY
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgcagacactgaaccaagacatcaaggaccgctcctttaagtccgcctacctgctgttc
ggggacgaggcatttctcaaaaagagctacaagaaccggctgaaggaggctgtcaccggc
ggggacaccatgaactacaactattacgagggcaaggggatcaacgttccggagattctg
gggatggcggacaccatgccgtttttcgcggagaagcggctgattctggtggaggacagc
ggattcttcaagggaggcggggaggcggaaagcctggcggaatatctgcccaatgtgccg
gacaccacctgtctgctgtttgtggagaccgaggtggacaagcgcagcaagctgtacaag
gcggtgaagaagtacggttacgcggcggagatggtgcgccaggagccggcccagctggcc
cgttgggctgcgggagtgttggcccgggagggaaagaagatcaccggccgcaccatggat
ctgtttctcagcaagaccggggacgacatggagaacattctctcggagctggacaagctg
atcagctacaccctggggcgggacgtgatcacggacgccgatgtggaggcggtctgtgtc
acccaggtgacaaataaaatttttgacatgattacggccatttccagccgtcagacgcga
aaggccatggacctgtacgaggaccttctgactctgaaggagccgcccatgcggattctc
tttctcatcgcccggcagttcaaccagattctccaggtgaaggagctgatgggcaaaggc
atggacaagagcaccatcgcgtccaaattgaagctggccccctttgtggcgggcaagatc
atgctgcaggccaagagctttaccaaggagcagattttttcctatgtgaacctgtgcgtg
gacgcggaggaagcggtgaagaccggcaagctggccgaccggctggcggtggagcttctg
attgccaatcattattga
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