Clostridium asparagiforme: NQ535_22490
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Entry
NQ535_22490 CDS
T08571
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
casp
Clostridium asparagiforme
Pathway
casp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ535_22490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
casp03019
]
NQ535_22490
Messenger RNA biogenesis [BR:
casp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ535_22490
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
ODP
Lactamase_B_6
Tle3
Motif
Other DBs
NCBI-ProteinID:
UWO79650
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All DBs
Position
complement(4980366..4982006)
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AA seq
546 aa
AA seq
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MKIIPLGGLEQIGMNITAFEYEDTIIVVDCGLAFPGDDMLGIDLVIPDVTYLKNNIDKVK
GFVITHGHEDHIGALPYILEQINVPVYGTKLTMALIEHKLKERGMMRNTKRKVVKHGQSV
NLGCFRVEYIKTNHSIQDAAALAIYTPVGTVLHTGDFKIDYTPVFGDPIDLQRFAELGKK
GVLALMADSTNAIRPGFTMSERTVGKTFDAIFAEHKNNRIIVATFASNVDRVQQIVNTAH
KYGRKVVVEGRSMVTVMEIARELDYINVPEGTLIDIEQLRNYPPESTVIISTGSQGESMA
ALSRMAASLHKKVTITPSDVVVLSSTPIPGNEKAVANVVNELSMRGATVINQDTHVSGHA
CQEDLKLIYSLVHPKYAIPIHGEHRHRMAQKELAQFMGVEKDNAVIINSGDVLALSEDTC
EVIDHVAAGGIFVDGLGVGDVGNIVLRDRQNLAQNGIIVVVLTLEKRSNQLLAGPDIVSR
GFVYVRESEDLLEEAHSVVVDAVDDCLNRHVSDWGKIKNVIKDSLSDFLWKRMKRSPMIL
PIIMEV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaatcattcccctgggcggtctggagcagatcggaatgaacatcaccgcctttgag
tacgaggacaccatcattgtggtggactgcggactggcgttcccgggcgacgacatgctg
ggaatcgatttggtgatcccggacgtcacctatctgaagaataacatcgacaaagtaaag
ggctttgtgatcactcacggacatgaggaccacatcggcgcccttccctatatattggag
cagatcaacgtgccggtttacggcaccaagctgaccatggccctgatcgagcacaagctg
aaagagcggggcatgatgcgcaacaccaagcgcaaggtggtgaagcacggacagtccgtg
aacctgggatgtttccgggtggagtacatcaagaccaaccacagcatccaggacgcggcg
gcattagccatctacaccccggtgggcacggtgcttcacacgggcgacttcaagatcgat
tacaccccggtgtttggagatcccatcgacctgcagcgctttgcggagctgggcaaaaag
ggcgtgctggcgctgatggcggacagtaccaatgccatccgtcccggatttaccatgtcc
gagcgcacggtgggcaagacctttgacgccattttcgcggagcacaagaataaccggatc
attgtggcgaccttcgcctctaacgtggaccgcgtgcagcagatcgtgaacacggcgcac
aaatacggccgcaaggtggtcgtggagggccgcagtatggtcacggtgatggagattgcc
agggagctggactacatcaatgtgccggagggaacgctgatcgacatcgagcagctgaga
aattatcccccggagtccacggtgatcatttccaccggaagccagggcgagtccatggcg
gctctgtcccgcatggcggcatcgcttcacaagaaggtcaccatcacgccctccgatgtg
gtggtgcttagctccaccccgatccccggaaatgaaaaggccgtggccaacgtggtcaac
gagctgtccatgaggggcgctacggtgatcaatcaggacactcatgtttcgggacatgcc
tgccaggaggatttgaaactgatctactccctggtacatcccaagtacgcgattccgatc
cacggcgagcatcgccaccgcatggctcagaaggagctggcccagtttatgggcgtggag
aaggacaacgcggtgatcatcaattccggcgacgtgctggccctctccgaggacacctgc
gaggtcatcgaccacgtggctgcgggcggcatctttgtggacggcctgggcgttggcgac
gtgggcaacattgtgctgcgcgaccgccagaacctggcccagaacggcatcattgtggtg
gtgctgaccctggagaagcgcagcaaccagcttttggccggtccggacatcgtatcccgc
ggctttgtgtacgtgcgggaatccgaggacctgctggaggaggcgcactccgtggtggtg
gacgcggtggacgactgcctgaaccgccacgtcagcgactggggtaagattaagaacgtg
atcaaagacagcctcagcgatttcctgtggaagcgtatgaagcgcagccccatgatttta
cccattattatggaagtgtaa
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