Clostridium asparagiforme: NQ535_23525
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Entry
NQ535_23525 CDS
T08571
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
casp
Clostridium asparagiforme
Pathway
casp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NQ535_23525 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
casp03019
]
NQ535_23525 (rny)
Messenger RNA biogenesis [BR:
casp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NQ535_23525 (rny)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
AllH
GKRP-like_C
Motif
Other DBs
NCBI-ProteinID:
UWO75767
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Position
complement(5228954..5230501)
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AA seq
515 aa
AA seq
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MLQIVVPSLIVGIIMAIIAWFAARSYERKQYDSKVGSAEEKSREIIDEALKTAETKKREA
LLEAKEESLKTKNELEKETKERRAELQRYEKRVLSKEENVEKKADALEKKEADLVRRENV
LSKRSAEVEAQYEKGIQELERISGLTSEQAKEYLLKSVEEDVKHDTAKLIKELEHKAKEE
ADKKARDLVVTAIQRCAADHVAETTVSVVQLPNDEMKGRIIGREGRNIRTLETLTGVELI
IDDTPEAVVLSGFDPIRREVARIALERLIVDGRIHPARIEEMVEKAQKEVETNMREEGEA
ACLEVGIHGIHPELIKLLGKMKFRTSYGQNALKHSIEVAQLSGLLAAELGVDVRLAKRAG
LLHDIGKSVDHDMEGTHVQLGADLCKKYKESATVINAVESHHGDVEPNSLISCIVQAADT
ISAARPGARRETLETYTNRLKQLEDITNSFKGVDKSFAIQAGREVRIMVVPEQINDDGMI
LLARDISKRIESELEYPGQIKVNVIRESRVTDYAK
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcagatagtggtcccatcactgatagtcgggataataatggctattattgcttgg
tttgccgcccgttcctacgaacggaagcagtacgacagcaaagtcggaagcgcggaagaa
aaatcaagagaaataatagatgaagcattaaaaactgcggagacaaagaagcgagaagct
ctcctggaagccaaggaagaatccttaaagacaaagaatgaattagaaaaggaaaccaag
gagagaagagcggaacttcaacgttacgagaagcgcgtattgagcaaggaagagaacgtt
gaaaaaaaggcagatgccctggaaaagaaggaggctgaccttgtcagaagagaaaatgtt
ctgagcaagcgcagtgcagaagtggaagcccaatatgaaaaaggcatacaggaactggag
cggatatccggtctgacctccgaacaggcaaaagaatatcttttaaaatctgttgaagaa
gatgtaaaacatgacacagcgaagttaattaaggaacttgaacacaaagcaaaggaagaa
gcggacaagaaggcaagggatctggttgtgactgcgattcagcggtgcgcggcggatcat
gtggcggaaaccaccgtttccgtcgtacagcttcccaatgatgagatgaaaggccgcatc
atcggccgagagggacgcaacattcgtacccttgagaccctgacgggcgtggaattgatt
atcgacgatacccctgaggcagtggtgttgtccgggtttgatcccattcgtagagaagtt
gccagaattgctctggagcgtttgattgtggacgggcgtattcatccggccagaatcgag
gaaatggtagaaaaagcacaaaaagaagtggagaccaacatgcgggaagaaggcgaggca
gcatgtctcgaggttggaattcacggcattcatcctgaactgattaagttgcttggtaag
atgaagtttagaacaagctatggacaaaacgcattaaagcattcaatcgaggttgcacag
ctgtcgggacttctggcagcggagcttggagtggatgtacgtttggcgaaacgtgccggt
ttattacatgacattggtaaatccgttgaccatgatatggaaggcacacatgttcagctg
ggcgcagatctctgcaagaagtacaaggagtctgcgaccgtgatcaacgcggtggagtct
catcatggcgatgttgaaccgaacagtctgatttcctgtattgtgcaggctgcggatacg
atttccgcggcaaggcccggtgcaaggcgtgagacgttggagacatatacaaacagattg
aaacagttagaagatattaccaactccttcaagggagtggacaagtcttttgccattcag
gcaggtcgggaagttcgaattatggtggttccggaacagatcaatgacgacggcatgata
ttgctggccagagacatttcgaaacgcatcgagagcgaactggaatatccgggacagatc
aaagtgaacgtgatccgtgagtcgagagtgacggattacgccaagtaa
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