Clostridium asparagiforme: NQ535_23575
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Entry
NQ535_23575 CDS
T08571
Name
(GenBank) endonuclease VIII
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
casp
Clostridium asparagiforme
Pathway
casp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
casp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NQ535_23575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
casp03400
]
NQ535_23575
Enzymes [BR:
casp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
NQ535_23575
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
NQ535_23575
DNA repair and recombination proteins [BR:
casp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NQ535_23575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Zn_ribbon_TFIIB
Auto_anti-p27
zf-FPG_IleRS
DNA_ligase_ZBD
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UWO75775
LinkDB
All DBs
Position
complement(5242086..5242916)
Genome browser
AA seq
276 aa
AA seq
DB search
MLEYPEIAVISRQLQKETAGKMVTAVLPPMKPHKFCWFNGDPAGYEAQLTGSRITAAEGF
GIFVELVFDNGRRLCFNDGVNVRLTGGEKPPAACQLLIRLDDGTALAFTVAMYGGIYLHD
GSYGDEYYVKSRAAEPPLSKAFAARYEKALGEAGPKLTAKAFLATEQRFPGIGNGVLQDI
LFRANIHPRRRLESMSGDEKAGLLAAVTSVLGEMETAGGRDTEKDIYGQPGGYRTIMSKN
GMKSGCPACGGPIVKAAYLGGSVYYCPACQPEKPEA
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctggaatatccggagatcgcagtgatatcccgccagcttcagaaggagacggcgggg
aaaatggtgacggcggttttgccgcccatgaagccccacaaattctgctggtttaacggg
gaccccgccggctacgaggcgcagcttacggggagcaggatcacggcggcggaagggttt
ggaatatttgtggagctggtattcgacaatggcaggcggctctgctttaacgacggcgtg
aacgtgcgcctgaccggcggggaaaagccgcccgccgcctgccagttattgatccgcctg
gatgacgggaccgccctggccttcaccgtggccatgtacggcgggatctatctgcatgac
gggagctacggggacgaatactatgtgaagagccgggccgcagagccgcccctctccaaa
gcgtttgcggcccgctatgaaaaagccctgggggaagcggggccaaagctcaccgccaag
gcgtttctggctacggagcagcgtttccccggcatcggaaacggcgtgctgcaggatatc
ctgtttcgggcgaacattcatcccaggcgcaggctggagtccatgagcggggacgaaaaa
gccggactattggcggccgtgacgtccgtgctgggggaaatggagacggcgggtggacgt
gacacggagaaagatatctacggccaaccgggcggttaccgcaccatcatgtccaaaaac
ggcatgaaatccggctgtccggcctgcggcggtcccattgtgaaggccgcctatctgggc
ggctccgtgtattactgtcccgcctgccagccggaaaaaccggaggcgtaa
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