Castellaniella sp. MT123: ABCV34_05110
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Entry
ABCV34_05110 CDS
T11683
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
cast Castellaniella sp. MT123
Pathway
cast03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cast00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABCV34_05110 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cast03400
]
ABCV34_05110 (uvrB)
DNA repair and recombination proteins [BR:
cast03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABCV34_05110 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABCV34_05110 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
AAA_22
SLFN-g3_helicase
Microtub_bd
DUF87
Motif
Other DBs
NCBI-ProteinID:
XAP02776
LinkDB
All DBs
Position
complement(1110708..1112771)
Genome browser
AA seq
687 aa
AA seq
DB search
MSVTGVAPDGAADSPAGAPGFVRFPGSPFQLFQPYPPAGDQPAAIQALEAGVRDGLMCQT
LLGVTGSGKTYTMANLIARTGRPAIVLAPNKTLAAQLYSEMREFFPRNAVEYFVSYYDYY
QPEAYVPSRDLFIEKDSSINEHIEQMRLSATKSLLERQDTIIVGTVSCIYGIGNPADYHA
MVLTLRTGDRVGRQEILARLVSMQYERNDMDFARGTFRARGEIIDVFPAEHAEQALRITL
FDDEIESLDLFDPLTGKLVQNLVRFTIFPSSHYVTPRETVLHAIQTIKDELRDRLAELTA
DGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGDPPPTLIDYLPANAMMF
IDESHVTIGQLGGMYRGDRSRKETLVQFGFRLPSALDNRPLRLEEFEARMPQCVFVSATP
GPYEAAHADEIVEQVVRPTGLVDPEVELRPAATQVDDLLGEAKLRIAHHERVLVTTLTKR
MAEDLTEYLQENGLKVRYLHSDIDTVERVEIIRDLRLGAFDVLVGINLLREGLDIPEVSL
VAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRVTDSMRRAMDETARRREKQQA
FNLEHGIVARGVSKAVRDLIDGVSVAASPVTAEAGFDESVLSDEKALAREIKRLEQRMNE
HARNLEFEQAAAVRDTLRTLRDRALLG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgactggtgttgcgcccgacggggcggcggatagcccggccggtgcccccggc
ttcgtgcgttttcccggcagtccgtttcagctgtttcagccctatccgccggccggcgac
cagccggcggcgatccaggcgctggaagccggtgtgcgcgatggcctcatgtgccagacc
ctgctgggggtgacgggctcgggcaagacctacacgatggccaacctgatcgcgcgcacc
gggcggcccgccatcgtgctggcgcccaacaagaccctggccgcgcagctgtactctgaa
atgcgcgaattcttccctcgcaacgcggtggaatacttcgtgtcctattacgattactac
cagcccgaggcttacgtgccctcgcgcgatctgttcatcgaaaaggactcgtcgatcaac
gagcacatcgagcagatgcggctttcggccacgaaaagcctgctggagcgtcaggacacc
atcatcgtcgggacggtgtcctgcatctacgggatcggtaaccccgccgactatcacgcc
atggtgctgaccctgcgaacgggcgatcgcgtcggccgccaggaaatcctggcgcgcctg
gtgtccatgcagtacgagcgcaacgacatggacttcgcccgcggcacgttccgggcgcgc
ggcgagatcatcgacgtgtttccggccgagcacgccgaacaggccctgcgcatcaccttg
ttcgacgacgaaatcgaatcgctggacctgttcgaccctttgacgggcaagctggtccag
aatctggtgcgtttcacgattttccccagctcgcactatgtcacgccccgcgagacagtg
ctgcatgcgatccagaccatcaaggatgaactgcgcgatcggttagcggaactgaccgcc
gacggtaaactggtcgaggcgcagcggctggaacaacgtacccgtttcgatctggaaatg
ctgcaggaactgggattttgcaagggcatcgaaaattactcccggcacctgtcgggcgcc
gcgcctggagatccgccaccgaccctgatcgattacctgccggccaatgcgatgatgttc
atcgacgagagccacgtgaccatcggacaactgggcggcatgtaccggggtgaccgttcc
cgcaaggaaaccctggtgcagttcggttttcgcctgccttccgcgctggacaaccggccc
ctgaggctggaggaattcgaggctcgcatgccgcagtgcgtcttcgtgtcggccacgccg
ggtccctacgaggccgcccatgccgatgaaatcgtcgagcaggtcgtacgcccgactggc
ctggtggacccggaggtcgaactgcggccggcggcgacgcaggtggatgacctgttgggc
gaggccaaactgcggatcgcgcatcacgaacgggtgctggtgacgacgttgaccaagcgc
atggcggaggatctgacggaatacctgcaggaaaatggcctgaaggtgcgctacctgcat
tccgatatcgacacggtggaacgggtcgagatcatccgcgatcttcggctgggggcgttc
gacgtgctggtgggcatcaacctgttgcgcgagggcctggacatccccgaagtgtccctg
gtggcgatcctggatgccgacaaggaaggttttctgcggtccgagcgcagcctgatccag
accattggtcgcgcggcccgcaacctgaacgggcgtgccatcctgtatgcggatcgggtg
actgattccatgcgccgcgccatggacgagacggcccggcgccgggaaaagcagcaggcc
ttcaatctggagcacggcatcgtcgcgcgcggggtcagcaaggcggtgcgcgatctgatc
gacggcgtctccgtggccgcctcgccggtgacggccgaggccggtttcgacgaatccgtg
ctaagcgacgagaaagccctggcccgagagatcaagcggttggaacaacgcatgaatgaa
catgcgcgcaacctggagttcgagcaggcggcggccgtgcgcgacaccctgcgcaccctg
agggaccgcgcgttgctggggtga
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